| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4908348 | 8 (0.150) | 12 (0.230) | 7/240 | NT | 60.6% | intergenic (‑279/‑3) | PP_4317/PP_4318 | hypothetical protein/transposase |
| ? | NC_002947 | = 4908381 | NA (NA) | coding (31/1302 nt) | PP_4318 | transposase | |||||
GTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4908197‑4908348‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACC < NC_002947/4908381‑4908261 GTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGCAGAAGCGGCCAAAGGGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAG > 2:749088/1‑150GTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAG > 1:600042/1‑150 GGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGG > 1:144961/1‑137 GGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGG < 2:144961/137‑1 GAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGC > 2:1221758/1‑150 GCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGG < 2:783532/120‑1 GCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGG > 1:783532/1‑120 TCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCC < 1:1221758/150‑1 AGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATT < 1:192003/100‑1 AGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATT > 2:192003/1‑100 GTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGG < 1:1302139/110‑1 GTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACACTGGCGGG > 2:1302139/1‑110 TGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTT > 2:1103639/1‑98 TGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTT < 1:1103639/98‑1 GCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACC > 1:835262/1‑124 GCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACC < 2:835262/124‑1 GCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCG > 2:256495/1‑89 GCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCG < 1:256495/89‑1 GTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4908197‑4908348‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACC < NC_002947/4908381‑4908261 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |