| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4908348 | 8 (0.150) | 12 (0.230) | 7/240 | NT | 60.6% | intergenic (‑279/‑3) | PP_4317/PP_4318 | hypothetical protein/transposase |
| ? | NC_002947 | = 4908381 | NA (NA) | coding (31/1302 nt) | PP_4318 | transposase | |||||
TTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGAT > NC_002947/4908203‑4908469 | ttttGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAAt > 1:735278/1‑150 (MQ=32) tttGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGCCAAACtt > 1:1412535/1‑150 (MQ=32) tGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGCCAAACTTGc < 2:1304009/150‑1 (MQ=32) gACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGCCAAACTTGcc < 2:600042/150‑1 (MQ=32) gACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGCCAAACTTGcc > 1:652432/1‑150 (MQ=32) aCAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGc > 1:882017/1‑139 (MQ=33) aCAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGc < 2:882017/139‑1 (MQ=33) aaGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGCCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCAAGCGTAATGGCCAAACTTGCCTTGGAg < 1:193218/150‑1 (MQ=17) tCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCa < 2:652432/150‑1 (MQ=11) ggTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGcaatggcctgctccaaggcaagtttggccattacgctggcgg > 1:144961‑M1/1‑95 (MQ=255) ggTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGcaatggcctgctccaaggcaagtttggccattacgctggcgg < 2:144961‑M1/137‑43 (MQ=255) gAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCACTCCGGCGcaatggcctgctccaaggcaagtttggccattacgctggcgggtgcttttttctcgaatcgcgc > 2:1221758‑M1/1‑86 (MQ=255) gCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGtaatggcctgctccaaggcaagtttggccattacgctggcgg > 1:783532‑M1/1‑78 (MQ=255) gCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGtaatggcctgctccaaggcaagtttggccattacgctggcgg < 2:783532‑M1/120‑43 (MQ=255) tCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCACTCCGGCGcaatggcctgctccaaggcaagtttggccattacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcc < 1:1221758‑M1/150‑78 (MQ=255) aGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGcaatggcctgctccaaggcaagtttggccatt > 2:192003‑M1/1‑68 (MQ=255) aGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGcaatggcctgctccaaggcaagtttggccatt < 1:192003‑M1/100‑33 (MQ=255) gTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGcaatggcctgctccaaggcaagtttggccattacgctggcggg < 1:1302139‑M1/110‑44 (MQ=255) gTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGcaatggcctgctccaaggcaagtttggccattacactggcggg > 2:1302139‑M1/1‑67 (MQ=255) tgGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCACTCCGGCGcaatggcctgctccaaggcaagtttggccattacgctggcgggtgctttt < 1:1103639‑M1/98‑51 (MQ=255) tgGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCACTCCGGCGcaatggcctgctccaaggcaagtttggccattacgctggcgggtgctttt > 2:1103639‑M1/1‑48 (MQ=255) gcgcaatggcctgctccaaggcaagtttggccattacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctacc > 1:835262‑M1/1‑3 (MQ=255) gcgcaatggcctgctccaaggcaagtttggccattacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctacc < 2:835262‑M1/124‑122 (MQ=255) gcaatggcctgctccaaggcaagtttggccattacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcg < 1:256495‑M1/89‑89 (MQ=255) gcaatggcctgctccaaggcaagtttggccattacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcg > 2:256495‑M1/1‑1 (MQ=255) | TTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGAT > NC_002947/4908203‑4908469 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |