| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5053118 = | 47 (0.890) | 6 (0.120) | 5/226 | NT | 11.5% | coding (1381/1833 nt) | gsiA | glutathione ABC transporter ATP‑binding protein |
| ? | NC_002947 | 5053171 = | 49 (1.020) | coding (1328/1833 nt) | gsiA | glutathione ABC transporter ATP‑binding protein | |||||
ACTGTAGCTCAATCGATC‑ATTGAGCCGCTCAGAGTGCATGGGCTTTACGATGCCAAGCGATGTGAAGAGGTCGCCATTGAGTTGCTCGTAAAAGTGGGGCTGCCCGCCGATGCTGCTTGGCGCTTGCCGCACGAGTTCTCTGGCGGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5053268‑5053118‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgggcagcCCCACTTTTACGAGCAACTCAATGGCGACCTCTTCACATCGCTTGGCATCGTAAAGCCCATGCACTCTGAGCGGCTCAATGATCGATTGAGCTACAGTCTGCCGTGGATTCAGGCTCGAATAAGGATCCTGGAAGACCATCTGGAT > NC_002947/5053171‑5053316 ACTGTAGCTCAATCGATC‑ATTGAGCCGCTCAGAGTGCATGGGCTTTACGATGCCAAGCGATGTGAAGAGGTCGCCATTGAGTTGCTCGTAAAAGTGGGGCTGCCCGCCGATGCTGCTTGGCGCTTGCCGCACGAGTTCTCTGGCGGGCAG > 1:402747/1‑150 gcgGCTCAAT‑GATCGATTGAGCCGCTCAGAGTGCATGGGCTTTACGATGCCAAGCGATGTGAAGAGGTCGCCATTGAGTTGCTCGTAAAAGTGGGGCTGCCCGCCGATGCTGCTTGGCGCTTGCCGCACGAGTTCTCTGGCGGGCA < 1:613668/143‑1 gcgGCTCAAT‑GATCGATTGAGCCGCTCAGAGTGCATGGGCTTTACGATGCCAAGCGATGTGAAGAGGTCGCCATTGAGTTGCTCGTAAAAGTGGGGCTGCCCGCCGATGCTGCTTGGCGCTTGCCGCACGAGTTCTCTGGCGGGCA > 2:613668/4‑146 GTCGCCATTGAGTTGCTCGTAAAAGTGGGGCTGCCCGCCGATGCTGCTTGGCGCTTGCCGCACGAGTTCTCTG < 1:1063379/73‑1 GTCGCCATTGAGTTGCTCGTAAAAGTGGGGCTGCCCGCCGATGCTGCTTGGCGCTTGCCGCACGAGTTCTCTG > 2:1063379/1‑73 TGCCCGCCGATGCTGCTTGGCGCTTGCCGCACGAGTTCTCTGGCGGGCAGCCCCACTTTTACGAGCAACTCAATGGCGACCTCTTCACATCGCTTGGCATCGTAAAGCCCATGCACTCTGAGCGGCTCAATGATCGATTGAGCTACAGTC > 2:832873/1‑150 TGCCCGCCGATGCTGCTTGGCGCTTGCCGCACGAGTTCTCTGGCGGGCAGCCCCACTTTTACGAGCAACTCAATG > 1:1156074/1‑75 TGCCCGCCGATGCTGCTTGGCGCTTGCCGCACGAGTTCTCTGGCGGGCAGCCCCACTTTTACGAGCAACTCAATG < 2:1156074/75‑1 CCGCCGATGCTGCTTGGCGCTTGCCGCACGAGTTCTCTGGCGGGCAGCCCCACTTTTACGAGCAACTCAATGGCGACCTCTTCACATCGCTTGGCATCGTAAAGCCCATGCACTCTGAGCGGCTCAATGATCGATTGAGCTACAGTCTGC > 2:271173/1‑150 CTTGGCGCTTGCCGCACGAGTTCTCTGGCGGGCAGCCCCACTTTTACGAGCAACTCAATGGCGACCTCTTCACATCGCTTGGCATCGTAAAGCCCATGCACTCTGAGCGGCTCAATGATCGATTGAGCTACAGTCTGCCGTGGATTCAGG < 1:832873/150‑1 CCGCACGAGTTCTCTGGCGGGCAGCCCCACTTTTACGAGCAACTCAATGGCGACCTCTTCACATCGCTTGGCATCGTAAAGCCCATGCACTCTGAGCGGCTCAATGATCGATTGAGCTACAGTCTGCCGTGGATTCAGGCTCGAATAAGG < 1:271173/150‑1 CAGCCCCACTTTTACGAGCAACTCAATGGCGACCTCTTCACATCGCTTGGCATCGTAAAGCCCATGCACTCTGAGCGGCTCAATGATCGATTGAGCTACAGTCTGCCGTGGATTCAGGCTCGAATAAGGATCCTGGAAGACCATCTGGAT < 2:604491/150‑1 ACTGTAGCTCAATCGATC‑ATTGAGCCGCTCAGAGTGCATGGGCTTTACGATGCCAAGCGATGTGAAGAGGTCGCCATTGAGTTGCTCGTAAAAGTGGGGCTGCCCGCCGATGCTGCTTGGCGCTTGCCGCACGAGTTCTCTGGCGGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5053268‑5053118‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgggcagcCCCACTTTTACGAGCAACTCAATGGCGACCTCTTCACATCGCTTGGCATCGTAAAGCCCATGCACTCTGAGCGGCTCAATGATCGATTGAGCTACAGTCTGCCGTGGATTCAGGCTCGAATAAGGATCCTGGAAGACCATCTGGAT > NC_002947/5053171‑5053316 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |