New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5190385 = | 43 (0.820) | 3 (0.060) | 3/226 | NT | 7.5% | intergenic (‑72/+102) | PP_4570/cysK | hypothetical protein/cysteine synthase A |
? | NC_002947 | 5190422 = | 35 (0.730) | intergenic (‑109/+65) | PP_4570/cysK | hypothetical protein/cysteine synthase A |
GTCGAGCATGCTGTTCAGCGACATGTTCAGCGAGCAGGAAACCCAGCAGTAATCGGCCTTGCCGCTGATCCGGCGCAACGATCGGCGGACTGGTTTATTGCAAAATCTTCATGAATGCGATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5190538‑5190385 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgggatcgCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAG > NC_002947/5190422‑5190564 GTCGAGCATGCTGTTCAGCGACATGTTCAGCGAGCAGGAAACCCAGCAGTAATCGGCCTTGCCGCTGATCCGGCGCAACGATCGGCGGACTGGTTTATTGCAAAATCTTCATGAATGCGATCCCGCCCGGGTTGTTTTTACCGCGGCGGG > 1:1189921/1‑150 GAGCATGCTGTTCAGCGACATGTTCAGCGAGCAGGAAACCCAGCAGTAATCGGCCTTGCCGCTGATCCGGCGCAACGATCGGCGGACTGGTTTATTGCAAAATCTTCATGAATGCGATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATC > 1:1220905/1‑150 TTCATGAATGCGATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTT < 1:844658/125‑1 TTCATGAATGCGATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTT > 2:844658/1‑125 TCATGAATGCGATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAAGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAA > 2:175858/1‑150 CGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCA < 1:1121421/150‑1 CGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGATGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCA < 1:460677/150‑1 GGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAG > 1:772285/1‑150 GTCGAGCATGCTGTTCAGCGACATGTTCAGCGAGCAGGAAACCCAGCAGTAATCGGCCTTGCCGCTGATCCGGCGCAACGATCGGCGGACTGGTTTATTGCAAAATCTTCATGAATGCGATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5190538‑5190385 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgggatcgCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAG > NC_002947/5190422‑5190564 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |