| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5190385 = | 43 (0.820) | 3 (0.060) | 3/226 | NT | 7.5% | intergenic (‑72/+102) | PP_4570/cysK | hypothetical protein/cysteine synthase A |
| ? | NC_002947 | 5190422 = | 35 (0.730) | intergenic (‑109/+65) | PP_4570/cysK | hypothetical protein/cysteine synthase A | |||||
GCCGCGCAAGTGCACGAACAGCACGCTGCCGAAAAACACCAGCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATG > NC_002947/5190236‑5190532 | gCCGCGCAAGTGCACGAACAGCACGCTGCCGAAAAACACCAGCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAAcc > 2:335215/1‑150 (MQ=255) ctgcccgattcgggcgagcgatacttgtcgagcatgctgttcagcgacatgttcagcgagcaggaaacccagcagtaatcggccttgccgctgatccggcgcaacgatcggcggactggtttattgcaaaatcttcatgaatgCGATccc > 1:772285‑M1/144‑150 (MQ=255) tgcccgattcgggcgagcgatacttgtcgagcatgctgttcagcgacatgttcagcgagcaggaaacccatcagtaatcggccttgccgctgatccggcgcaacgatcggcggactggtttattgcaaaatcttcatgaatgCGATCccg < 1:460677‑M1/8‑1 (MQ=255) tgcccgattcgggcgagcgatacttgtcgagcatgctgttcagcgacatgttcagcgagcaggaaacccagcagtaatcggccttgccgctgatccggcgcaacgatcggcggactggtttattgcaaaatcttcatgaatgCGATCccg < 1:1121421‑M1/8‑1 (MQ=255) acACGAACAGCACGCTGCCGAAAAACACCAGCAAGACACCCGCCTTGGCGGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCCAAAAAAAATCATCCTGCCATCATAAACCGATCGcgccgc < 1:1182737/149‑1 (MQ=255) aGCACGCTGCCGAAAAACACCAGCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTaaaaa > 2:1121421/1‑150 (MQ=255) aGCACGCTGCCGAAAAACACCAGCAAGACACCCGCCTTGGCTGAAAAGGCGGTGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTaaaaa > 1:1106343/1‑150 (MQ=255) ccAGCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCa > 1:170689/1‑150 (MQ=255) cAGCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCAt > 2:808830/1‑150 (MQ=255) gCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCcgccgc > 1:342175/1‑120 (MQ=255) gCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCcgccgc < 2:342175/120‑1 (MQ=255) ttcagcgacatgttcagcgagcaggaaacccagcagtaatcggctttgccgctgatccggcgcaacgatcggcggactggtttattgcaaaatcttcatgaatgCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGa > 2:175858‑M1/105‑150 (MQ=255) ccGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCg < 1:641579/136‑1 (MQ=255) ccGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCg > 2:641579/1‑136 (MQ=255) gCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGAtttt < 1:808830/150‑1 (MQ=255) ttGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCcgccgc < 2:497155/106‑1 (MQ=255) ttGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCcgccgc > 1:497155/1‑106 (MQ=255) ggCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAAt < 2:537467/150‑1 (MQ=255) gAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTcc > 2:467372/1‑150 (MQ=255) aacccagcagtaatcggccttgccgctgatccggcgcaacgatcggcggactggtttattgcaaaatcttcatgaatgCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGaa < 1:844658‑M1/47‑1 (MQ=255) aacccagcagtaatcggccttgccgctgatccggcgcaacgatcggcggactggtttattgcaaaatcttcatgaatgCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGaa > 2:844658‑M1/79‑125 (MQ=255) tCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATc > 2:1189921/1‑150 (MQ=255) aTGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTcc > 1:286067/1‑141 (MQ=255) aTGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTcc < 2:286067/141‑1 (MQ=255) tGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGtt < 1:467372/150‑1 (MQ=255) cTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTACCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCa > 1:1390066/1‑150 (MQ=255) gagTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAgg > 1:736689/1‑150 (MQ=255) agTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGc < 2:170689/150‑1 (MQ=255) tCACGGCTGCGATAGCTGCTCACCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCg > 2:1416958/1‑150 (MQ=255) cgctgcCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTActgct < 1:1059356/150‑1 (MQ=255) gctgcCTGCTCTCCAGAAAATCATCCTGCCATCATAACCCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTActgctg < 1:1073739/150‑1 (MQ=255) gctgcCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTActgctg > 2:45235/1‑150 (MQ=255) ctgcctgcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGTGGGATCGCAGTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTgg < 1:923057/150‑1 (MQ=255) tgcctgcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATc > 2:1222590/1‑73 (MQ=255) tgcctgcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATc < 1:1222590/73‑1 (MQ=255) cctgcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGtt > 1:65354/1‑150 (MQ=255) cctgcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGtt < 1:335215/150‑1 (MQ=255) tgcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAAc > 1:349423/1‑95 (MQ=255) tgcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAAc < 2:349423/95‑1 (MQ=255) gcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGc > 2:1344618/1‑131 (MQ=255) gcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGc < 1:1344618/131‑1 (MQ=255) gcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTcc < 1:757910/150‑1 (MQ=255) tctcCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTg > 1:217150/1‑150 (MQ=255) tctcCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGCCCGATTACTGCTGGGTTTCCTg < 2:217150/150‑1 (MQ=255) ccAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTc > 1:743588/1‑150 (MQ=255) aGAAAATCATCCTGCCATCATAAACCGATCCCGCCGAGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGACGGTGCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGc > 1:1084972/1‑150 (MQ=255) tcCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGt > 2:460677/1‑150 (MQ=255) tcCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGt < 2:736689/150‑1 (MQ=255) tcCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGt > 1:384738/1‑150 (MQ=255) gCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCt < 2:65354/150‑1 (MQ=255) aaaCCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCa > 2:1220905/1‑150 (MQ=255) aCCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATg > 2:744554/1‑150 (MQ=255) ccGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATg > 1:636506/1‑149 (MQ=255) ccGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATg < 2:636506/149‑1 (MQ=255) | GCCGCGCAAGTGCACGAACAGCACGCTGCCGAAAAACACCAGCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATG > NC_002947/5190236‑5190532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |