New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5199072	37 (0.700)	5 (0.100)	5/234	NT	11.0%	coding (311/912 nt)	PP_4579	LysR family transcriptional regulator
	?	NC_002947	= 5199112	46 (0.920)					coding (351/912 nt)	PP_4579	LysR family transcriptional regulator

GCGTCAGCCTGACCCCGGAAGGCAGCAAGGTACTGGAATACGCCGAACGCATGCTGGAAACCGCCAAGGCCATGAAGCAATCGCTGGACAGCGACCGGGCCAAGGTCGGGCGCATTCGCATCGGGGTGATGGATACTGTGATCCACACCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5198922‑5199072 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacctgTGGGTAGCGCTCGGTCAGCTCCGCCACCAGCGCGCTCATCCAGGTGTGGATCACAGTATCCATCACCCCGATGCGAATGCGCCCGACCTTGGCCCGGTCGCTGTCCAGCGATTGCTTCATGGCCTTGGCGGTTTCCAGCATGCGTTC  <  NC_002947/5199112‑5198966                                                                                                                                                                                                                                                                                                            GCGTCAGCCTGCCCGCGGAAGGCAGCAAGGTACTGGAATACGCCGAACGCATGCTGGAAACCGCCAAGGCCATGAAGCAATCGCTGGACAGCGACCGGGCCAAGGTCGGGCGCATTCGCATCGGGGTGATGGATACTGTGATCCACACCT                                                                                                                                                      <  2:1394931/150‑1                                  TGGAATACGCCGAACGCATGCTGGAAACCGCCAAGGCCATGAAGCAATCGCTGGACAGCGACCGGGCCAAGGTCGGGCGCATTCGCATCGGGGTGATGGATACTGTGATCCAC                                                                                                                                                          <  1:1206926/113‑1                                  TGGAATACGCCGAACGCATGCTGGAAACCGCCAAGGCCATGAAGCAATCGCTGGACAGCGACCGGGCCAAGGTCGGGCGCATTCGCATCGGGGTGATGGATACTGTGATCCAC                                                                                                                                                          >  2:1206926/1‑113                                                    TGCTGGAAACCGCCAAGGCCATGAAGCAATCGCTGGACAGCGACCGGGCCAAGGTCGGGCGCATTCGCATCGGGGTGATGGATACTGTGATCCACACCTGTGGGTAGCGCTCGGTCAGCTCCGCCACCAGCGCGCTCATCCAGGTGTGGA                                                                                                   >  1:183063/1‑150                                                    TGCTGGAAACCGCCAAGGCCATGAAGCAATCGCTGGACAGCGACCGGGCCAAGGTCGGGCGCATTCGCATCGGGGTGATGGATACTGTGATCCACACCTGTGGGTAGCGCTCGGTCAGCTCCGCCACCAGCGCGCTCATCCAGGTGTGGA                                                                                                   <  2:183063/150‑1                                                                      CCATGAAGCAATCGCTGGACAGCGACCGGGCCAAGGTCGGGCGCATTCGCATCGGGGTGATGGATACTGTGATCCACACCTG‑GATGAGCGCTCGGTCAGCTCCGCCACCAGCGCGCTCATCCAGG                                                                                                         >  1:70505/1‑125                                                                      CCATGAAGCAATCGCTGGACAGCGACCGGGCCAAGGTCGGGCGCATTCGCATCGGGGTGATGGATACTGTGATCCACACCTG‑GATGAGCGCTCGGTCAGCTCCGCCACCAGCGCGCTCATCCAGG                                                                                                         <  2:70505/125‑1                                                                      CCACGAAGCAATCGCTGGACAGCGACCGGGCCAAGGTCGGGCGCATAGGCATCGTGGTGATGGATACTGTGATCCACACCTGTGGGTAGCGATCGGTCAGCTCCGCCACCAGCGCGCTCATCCAGGTGTGGATCACAGTATCCATCACCC                                                                                 <  1:1224153/150‑1                                                                                                                                                  CACCTGTGGGTAGCGCTCGGTCAGCTCCGCCACCAGCGCGCTCATCCAGGTGTGGATCACAGTATCCATCACCCCGATGCGAATGCGCCCGACCTTG                                                          >  1:1400580/1‑97                                                                                                                                                  CACCTGTGGGTAGCGCTCGGTCAGCTCCGCCACCAGCGCGCTCATCCAGGTGTGGATCACAGTATCCATCACCCCGATGCGAATGCGCCCGACCTTG                                                          <  2:1400580/97‑1                                                                                                                                                  CACCTGTGGGTAGCGCTCGGTCAGCTCCGCCACCAGCGCGCTCATCCAGGTGTGGATCACAGTATCCATCACCCCGATGCGAATGC                                                                     <  1:1165931/86‑1                                                                                                                                                  CACCTGTGGGTAGCGCTCGGTCAGCTCCGCCACCAGCGCGCTCATCCAGGTGTGGATCACAGTATCCATCACCCCGATGCGAATGC                                                                     >  2:1165931/1‑86                                                                                                                                                   ACCTGTGGGTAGCGCTCGGTCAGCTCCGCCACCAGCGCGCTCATCCAGGTGTGGATCACAGTATCCATCACCCCGATGCGAATGCGCCCGACCTTGGCCCGGTCGCTGTCCAGCGATTGCTTCATGGCCTTGGCGGTTTCCAGCATGCGT    >  1:59497/1‑150                                                                                                                                                     CTGTGGGTAGCGCTCGGTCAGCTCCGCCACCAGCGCGCTCATCCAGGTGTGGATCACAGTATCCATCACCCCGATGCGAATGCGCCCGACCTTGGCCCGGTCGCTGTCCAGCGATTGCTTCATGGCCTTGGCGGTTTCCAGCATGCGTTC  <  2:1050089/150‑1                                                                                                                                                                                                                                                                                                            GCGTCAGCCTGACCCCGGAAGGCAGCAAGGTACTGGAATACGCCGAACGCATGCTGGAAACCGCCAAGGCCATGAAGCAATCGCTGGACAGCGACCGGGCCAAGGTCGGGCGCATTCGCATCGGGGTGATGGATACTGTGATCCACACCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5198922‑5199072 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacctgTGGGTAGCGCTCGGTCAGCTCCGCCACCAGCGCGCTCATCCAGGTGTGGATCACAGTATCCATCACCCCGATGCGAATGCGCCCGACCTTGGCCCGGTCGCTGTCCAGCGATTGCTTCATGGCCTTGGCGGTTTCCAGCATGCGTTC  <  NC_002947/5199112‑5198966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.