New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5290029 =	49 (0.930)	4 (0.080)	4/236	NT	7.5%	coding (345/765 nt)	PP_4663	transmembrane protein
	?	NC_002947	5290058 =	52 (1.030)					coding (316/765 nt)	PP_4663	transmembrane protein

CACCAACCTGTGGCAGCTGGCCAGCGGCGGGCACCTGCGAGGGTTGTTGGTCCGCCTGGGGCCGATGCTGGCATTGATTTTTGTCGGCACCTTGCTGGGCAGCGCCTGGCTGGGAATCAACAGTGGCCCCTGGGCTGCGCATGCGCTGGGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5290182‑5290029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAACAACCCTCGCAGGTGCCCGCCGCTGGCCAGCTGCCACAGGTTGGTGAGTGTCGAGGGCACGATCAAC  >  NC_002947/5290058‑5290203                                                                                                                                                                                                                                                                                                              CACCAACCTGTGGCAGCTGGCCAGCGGCGGGCACCTGCGAGGGTTGTTGGTCCGCCTGGGGCCGATGCTGGCATTGATTTTTGTCGGCACCTTGCTGGGCAGCGCCTGGCTGGGAATCAACAGTGGCCCCTGGGCTGCGCATGCGCTGGG                                                                                                                                                        <  1:1294184/150‑1  ACCAACCTGTGGCAGCTGGCCAGCGGCGGGCACCTGCGAGGGTTGTTGGTCCGCCTGGGGCCGATGCTGGCATTGATTTTTGTCGGCACCTTGCTGGGCAGCGCCTGGCTGGTAATCAACAGTGGCCCCTGGGCTGCGCATGCGCTGGGG                                                                                                                                                       >  1:373625/1‑150   CCAACCTGTGGCAGCTGGCCAGCGGCGGGCACCTGCGAGGGTTGTTGGTCCGCCTGGGGCCGATGCTGGCATTGATTTTTGTCGGCACCTTGCTGGGCAGCGCCTGGCTGGGAATCAACAGTGGCCCCTGGGCTGCGCATGCGCTGGGGG                                                                                                                                                      >  2:45092/1‑150                                    TGCGAGGGTTGTTGGTCCGCCTGGGGCCGATGCTGGCATTGATTTTTGTCGGCACCTTGCTGGGCAGCGCCTGGCTGGGAATCAACAGTGGCCCCTGGGCTGCGCATGCGCTGGGGG                                                                                                                                                      >  1:1064342/1‑117                                    TGCGAGGGTTGTTGGTCCGCCTGGGGCCGATGCTGGCATTGATTTTTGTCGGCACCTTGCTGGGCAGCGCCTGGCTGGGAATCAACAGTGGCCCCTGGGCTGCGCATGCGCTGGGGG                                                                                                                                                      <  2:1064342/117‑1                                                                                                                  GAATCAACAGTGGCCCCTGGGCTGCGCATGCGCTGGGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAACAACCCTCGCAGGTGCCCGCCGCTGGCCA                                        >  1:601935/1‑149                                                                                                                  GAATCAACAGTGGCCCCTGGGCTGCGCATGCGCTGGGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAACAACCCTCGCAGGTGCCCGCCGCTGGCCA                                        <  2:601935/149‑1                                                                                                                       AACAGTGGCCCCTGGGCTGCGCATGCGCTGGGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAA                                                                     >  1:1309750/1‑115                                                                                                                       AACAGTGGCCCCTGGGCTGCGCATGCGCTGGGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAA                                                                     <  2:1309750/115‑1                                                                                                                                                       gtGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAACAACCCTCGCAGGTGCCCGCCGCTGGCCAGCTGCCACAGGTTGGTGAGTGTCGAGGGCACGATCAAC  <  2:1072097/148‑1                                                                                                                                                                                                                                                                                                              CACCAACCTGTGGCAGCTGGCCAGCGGCGGGCACCTGCGAGGGTTGTTGGTCCGCCTGGGGCCGATGCTGGCATTGATTTTTGTCGGCACCTTGCTGGGCAGCGCCTGGCTGGGAATCAACAGTGGCCCCTGGGCTGCGCATGCGCTGGGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5290182‑5290029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAACAACCCTCGCAGGTGCCCGCCGCTGGCCAGCTGCCACAGGTTGGTGAGTGTCGAGGGCACGATCAAC  >  NC_002947/5290058‑5290203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.