New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5290029 =	49 (0.930)	4 (0.080)	4/236	NT	7.5%	coding (345/765 nt)	PP_4663	transmembrane protein
	?	NC_002947	5290058 =	52 (1.030)					coding (316/765 nt)	PP_4663	transmembrane protein

GGCACCGCTGGCATCACGAACACCCCGGTCGACGCAGTGACCACACCCGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAACAACCCTCGCAGGTGCCCGCCGCTGGCCAGCTGCCACAGG  >  NC_002947/5289883‑5290176                                                                                                                                                   |                                                                                                                                                    gttgatcgtgccctcgacactcaccaacctgtggcagctggccagcggcgggcacctgcgagggttgttggtccgcctggggccgatgctggcattgatttttgtcggcaccttgctgggcagcgcctggctgggaatcaacagtggcac                                                                                                                                                  <  2:1072097‑M1/4‑3 (MQ=255)             aTCACGAACACCCCGGTCGACGCAGTGACCACACCCGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATgc                                                                                                                                      <  1:1277889/150‑1 (MQ=255)             aTCACGAACACCCCGGTCGACGCAGTGACCACACCCGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATgc                                                                                                                                      >  1:640848/1‑150 (MQ=255)                       ccccGGTCGACGCAGTGACCACACCCGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAgg                                                                                                                            <  2:1279168/150‑1 (MQ=255)                        cccGGTCGACGCAGTGACCACACCCGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAggg                                                                                                                           >  1:792320/1‑150 (MQ=255)                        cccGGTCGACGCAGTGACCACACCCGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAggg                                                                                                                           >  2:198554/1‑150 (MQ=255)                        cccGGTCGACGCAGTGACCACACCCGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAggg                                                                                                                           >  1:304913/1‑150 (MQ=255)                                 cGCAGTGACCACACCCGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTTCAAGCCCGGGCCGACCAACCCATACATCGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGtt                                                                                                                  <  1:1239476/150‑1 (MQ=255)                                 cGCAGTGACCACACCCGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGtt                                                                                                                  >  1:1369524/1‑150 (MQ=255)                                 cGCAGTGACCACACCCGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGtt                                                                                                                  <  1:524350/150‑1 (MQ=255)                                  gccgcgACCACGCCCGTGAGCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTg                                                                                                                 <  2:792320/145‑1 (MQ=255)                                      ggACCACACCCGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTc                                                                                                             <  1:1018822/149‑1 (MQ=255)                                       tggccagcggcgggcacctgcgagggttgttggtccgcctggggccgatgctggcattgatttttgtcggcaccttgctgggcagcgcctggctgggaatcaacagtgGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTc                                                                                                             >  1:601935‑M1/109‑149 (MQ=255)                                       tggccagcggcgggcacctgcgagggttgttggtccgcctggggccgatgctggcattgatttttgtcggcaccttgctgggcagcgcctggctgggaatcaacagtgGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTc                                                                                                             <  2:601935‑M1/41‑1 (MQ=255)                                        aCCACACCCGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGa                                                                                                                <  2:496095/145‑1 (MQ=255)                                        aCCACACCCGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGa                                                                                                                >  1:496095/1‑145 (MQ=255)                                          cacaCCCGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCccag                                                                                                         >  1:328136/1‑150 (MQ=255)                                               ccGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAgg                                                                                                    <  2:640848/150‑1 (MQ=255)                                                cGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCATgc                                                                                                   <  2:171811/150‑1 (MQ=255)                                                          ccGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAg                                                                                                                                  >  1:873581/1‑109 (MQ=255)                                                          ccGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAg                                                                                                                                  <  2:873581/109‑1 (MQ=255)                                                             cAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAg                                                                                      <  1:848367/150‑1 (MQ=255)                                                             cAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAg                                                                                      <  1:939629/150‑1 (MQ=255)                                                                    ttggtccgcctggggccgatgctggcattgatttttgtcggcaccttgctgggcagcgcctggctgggaatcaacagtgGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGtt                                                                                                                  >  1:1309750‑M1/80‑115 (MQ=255)                                                                    ttggtccgcctggggccgatgctggcattgatttttgtcggcaccttgctgggcagcgcctggctgggaatcaacagtgGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGtt                                                                                                                  <  2:1309750‑M1/36‑1 (MQ=255)                                                                       ccagccagCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACaa                                                                            >  2:255234/1‑150 (MQ=255)                                                                        cagccagcGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACaaa                                                                           >  2:792584/1‑150 (MQ=255)                                                                        cagccagcGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACaaa                                                                           <  2:1376936/150‑1 (MQ=255)                                                                               cgcTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAAt                                                                    <  2:1392058/150‑1 (MQ=255)                                                                                  tCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGcc                                                                 >  2:839657/1‑150 (MQ=255)                                                                                   cGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCa                                                                <  1:839657/150‑1 (MQ=255)                                                                                         ccGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGgc                                                                                                   <  1:75921/109‑1 (MQ=255)                                                                                         ccGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGgc                                                                                                   >  2:75921/1‑109 (MQ=255)                                                                                         ccGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGc                                                                  <  2:1300082/142‑1 (MQ=255)                                                                                         ccGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGc                                                                  >  1:1300082/1‑142 (MQ=255)                                                                                          cGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCgg                                                         <  1:198554/150‑1 (MQ=255)                                                                                            gggCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGcc                                                       <  2:328136/150‑1 (MQ=255)                                                                                               cTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCG‑CCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAg                                                   >  2:313539/1‑150 (MQ=255)                                                                                                tAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAg                                                   <  2:386741/150‑1 (MQ=255)                                                                                                  gCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGc                                                        >  2:471746/1‑143 (MQ=255)                                                                                                  gCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGc                                                        <  1:471746/143‑1 (MQ=255)                                                                                                  gCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGc                                                 <  2:859020/150‑1 (MQ=255)                                                                                                   cggCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGa                                                                                                                <  2:903785/84‑1 (MQ=255)                                                                                                   cTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGa                                                                                                                >  1:903785/1‑86 (MQ=255)                                                                                                      aaatcctgggCCGACCATCCCTGATGACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGAc                                             <  2:304913/143‑1 (MQ=255)                                                                                                               gCCGACCAACCCATACAACGCATAGTCGAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAACAAccc                                    >  1:903712/1‑150 (MQ=255)                                                                                                                     taattcATACAATTCATATACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAACAACCCTCGCAg                              >  2:380155/6‑150 (MQ=255)                                                                                                                       aCCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAACAACCCTCGCAGGt                            >  2:547192/1‑150 (MQ=255)                                                                                                                         ccATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGAGTGGGCCCCGATCGGACCAACAACCCGCGCAGGTGc                          >  2:373625/1‑150 (MQ=255)                                                                                                                              cAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAACAACCCTCGCAGGTGCccgcc                     >  1:553330/1‑150 (MQ=255)                                                                                                                                aCGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCCCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAACAACCCTCGCAGGTGCCcgccgc                   >  2:60862/1‑150 (MQ=255)                                                                                                                                       gACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCaa                                                                     >  2:1398462/1‑93 (MQ=255)                                                                                                                                       gACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCaa                                                                     <  1:1398462/93‑1 (MQ=255)                                                                                                                                          cAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAACAACCCTCGCAGGTGCCCGCCGCTGGCCAGCTg         >  1:45092/1‑150 (MQ=255)                                                                                                                                                ggCGCCCCCCATCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAACAACCCTCGCAGGTGCCCGCCGCTGGCCAGCTGCCACAg   <  2:436694/150‑1 (MQ=255)                                                                                                                                                 gcgcCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAACAACCCTCGCAGGTGCCCGCCGCTGGCCAGCTGCCACAgg  >  2:1019274/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GGCACCGCTGGCATCACGAACACCCCGGTCGACGCAGTGACCACACCCGTGACCAGCCCGCAAAGCGGTCCCAGCCAGCGCTCGTGTCCCGGGGCTAGCTGCAAGCCCGGGCCGACCAACCCATACAACGCATAGACCAGCAAGGCGCCCCCCAGCGCATGCGCAGCCCAGGGGCCACTGTTGATTCCCAGCCAGGCGCTGCCCAGCAAGGTGCCGACAAAAATCAATGCCAGCATCGGCCCCAGGCGGACCAACAACCCTCGCAGGTGCCCGCCGCTGGCCAGCTGCCACAGG  >  NC_002947/5289883‑5290176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.