New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5405650 =	48 (0.910)	4 (0.080)	4/238	NT	8.3%	coding (368/660 nt)	PP_4749	amino acid ABC transporter permease
	?	NC_002947	5405682 =	42 (0.830)					coding (336/660 nt)	PP_4749	amino acid ABC transporter permease

ATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5405687‑5405650 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaCTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGA  >  NC_002947/5405682‑5405770                                                                                                                                 ATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCGCCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATG                                    <  1:997105/93‑1 ATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCGCCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATG                                    >  2:997105/1‑93      GTCGGTGGCCGCGGGGCAAACCGAGGCCGCCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAG            <  1:1248879/112‑1      GTCGGTGGCCGCGGGGCAAACCGAGGCCGCCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAG            >  2:1248879/1‑112                                     GACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGA  >  1:1153371/1‑91                                     GACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGA  <  2:1153371/91‑1                                                                                                                                 ATCGAGTCGGTGGCCGCGGGGCAAACCGAGGCCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5405687‑5405650 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaCTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGA  >  NC_002947/5405682‑5405770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.