New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5405650 =	48 (0.910)	4 (0.080)	4/238	NT	8.3%	coding (368/660 nt)	PP_4749	amino acid ABC transporter permease
	?	NC_002947	5405682 =	42 (0.830)					coding (336/660 nt)	PP_4749	amino acid ABC transporter permease

AGCGACGAGGCCTGGAACATCATGATCGAGAACCCCAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGAGGTTGACGCTGGGCAGGCCAAAGTAGAAATACTGCAGCAGGATCAACGCCGGTGCG  >  NC_002947/5405533‑5405826                                                                                                                                                      |                                                                                                                                                 aGCGACGAGGCCTGGAACATCATGATCGAGAACCCCAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGAc                                                                                                                                                  >  1:1192235/1‑150 (MQ=255)     acgaGGCCTGGAACATCATGATCGAGAACCCCAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGa                                                                                                                                              <  2:1131094/150‑1 (MQ=255)     acgaGGCCTGGAACATCATGATCGAGAACCCCAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGa                                                                                                                                              <  2:1152815/150‑1 (MQ=255)          gCCTGGAACATCATGATCGAGAACCCCAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCa                                                                                                                                         >  1:762481/1‑150 (MQ=255)            cTGGAACATCATGATCGAGAACCCCAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGa                                                                                                                                              >  1:511799/1‑143 (MQ=255)            cTGGAACATCATGATCGAGAACCCCAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGa                                                                                                                                              <  2:511799/143‑1 (MQ=255)                     catGATCGAGAACCCCAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGAt                                                                                                                              <  1:947185/150‑1 (MQ=255)                       tGATCGAGAACCCCAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGaa                                                                                                                                  <  1:1342457/144‑1 (MQ=255)                       tGATCGAGAACCCCAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGaa                                                                                                                                  >  2:1342457/1‑144 (MQ=255)                       tGATCGAGAACCCCAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGAttt                                                                                                                            >  2:208155/1‑150 (MQ=255)                        gATCGAGAACCCCAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCAACCGACTCGATGCCACCGCGAATGATTTc                                                                                                                           <  2:671891/150‑1 (MQ=255)                         aTCGAGAACCCCAGCAGAGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGACCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCa                                                                                                                          <  2:561625/150‑1 (MQ=255)                           cGAGAACCCCAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACt                                                                                                                        <  1:1303784/150‑1 (MQ=255)                                  cccAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGAt                                                                                                                                             >  2:571745/1‑122 (MQ=255)                                  cccAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGAt                                                                                                                                             <  1:571745/122‑1 (MQ=255)                                  cccAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAg                                                                                                                 >  1:58729/1‑150 (MQ=255)                                   ccAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGTCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATTCCACCGCGAATGATTTCACTGgt                                                                                                                     >  2:161526/1‑145 (MQ=255)                                   ccAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATTCCACCGCGAATGATTTCACTGgt                                                                                                                     <  1:161526/145‑1 (MQ=255)                                     agcagcGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAggcg                                                                                                              >  1:1188083/1‑150 (MQ=255)                                       ctcgttctgggctgctgcgctggccatggcgtactgcacggccgcctacaccagtgaaatcattcgcggtggcatcgagTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGAc                                                                                                                                                  >  2:1248879‑M1/80‑112 (MQ=255)                                       ctcgttctgggctgctgcgctggccatggcgtactgcacggccgcctacaccagtgaaatcattcgcggtggcatcgagTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGAc                                                                                                                                                  <  1:1248879‑M1/33‑1 (MQ=255)                                       cagcGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAggcggc                                                                                                            >  1:364229/1‑150 (MQ=255)                                            aTGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGc                                                                                                                                           >  2:460855/1‑114 (MQ=255)                                            aTGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGAGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGc                                                                                                                                           <  1:460855/114‑1 (MQ=255)                                               gCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCa                                                                                                                          >  2:1091428/1‑128 (MQ=255)                                               gCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCa                                                                                                                          <  1:1091428/128‑1 (MQ=255)                                                       aCCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATg                                                                                            <  2:168609/150‑1 (MQ=255)                                                               catggcgtactgcacggccgcctacaccagtgaaatcattcgcggtggcatcgagTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGAt                                                                                                                                             <  1:997105‑M1/38‑1 (MQ=255)                                                               catggcgtactgcacggccgcctacaccagtgaaatcattcgcggtggcatcgagTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGAt                                                                                                                                             >  2:997105‑M1/56‑93 (MQ=255)                                                                     aGGCAGGATCACCAAGCGCAGCGCGTCGAACCGGTGGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCCCCGACTCGATGCCACCACGGATGACTCCACTGCCGTAGGCGCCTGTCCAGTATGGTAGGGCCGGCGCagcagc                                                                              <  2:590207/150‑1 (MQ=255)                                                                           gATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGaa                                                                        <  2:762481/150‑1 (MQ=255)                                                                           gATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGACGCCACCGCGAATGATTTCACTGGTGTAGGCGGcc                                                                                                           <  2:336430/115‑1 (MQ=255)                                                                           gATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGACGCCACCGCGAATGATTTCACTGGTGTAGGCGGcc                                                                                                           >  1:336430/1‑115 (MQ=255)                                                                           gATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCCAATAGATGCCCAAGTGTCTCTTCACGTTCGTGTAGTCTACCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGaa                                                                        <  1:26852/150‑1 (MQ=255)                                                                               acaAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAg                                                                    <  1:633996/150‑1 (MQ=255)                                                                                 aaaGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGt                                                                  >  2:793132/1‑150 (MQ=255)                                                                                 aaaGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGt                                                                  >  2:32131/1‑150 (MQ=255)                                                                                       cagcgcGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGt                                                            <  2:1192235/150‑1 (MQ=255)                                                                                        agcgcGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAACAGCCCAGAACGAGGTCAGGGTg                                                           <  2:58729/150‑1 (MQ=255)                                                                                                gAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGAGGTTGAc                                                   >  2:182727/1‑150 (MQ=255)                                                                                                gAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGAGGTTGAc                                                   <  2:709714/150‑1 (MQ=255)                                                                                                     ggTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGAGGTTGACGCTgg                                              <  1:1079236/150‑1 (MQ=255)                                                                                                        tGAGGCCGATCACTTCGGCGGCCTCGGTTTGAGCTGCTGCGACCGACTCCATGCCACCGCGAATGATTTCACTGGTGTAGGCCGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGAGGTTGACGCTGGGCa                                           <  2:474169/150‑1 (MQ=255)                                                                                                           ggCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCAAGGCCAGCGCAGCAGCCCAGAACGAGGTCAgg                                                              >  1:243638/1‑128 (MQ=255)                                                                                                           cgCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGCCTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAgg                                                              <  2:243638/127‑1 (MQ=255)                                                                                                             ccGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGAGGTTGACGCTGGGCAGGCCa                                      <  2:364229/150‑1 (MQ=255)                                                                                                               gATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCAcc                                                                                                                                       <  1:859804/51‑1 (MQ=255)                                                                                                               gATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCAcc                                                                                                                                       >  2:859804/1‑51 (MQ=255)                                                                                                                atcgagtcggtggccgcggggcaaaccgaggccgccgaCTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATg                                                                                            >  2:997105‑M2/39‑93 (MQ=255)                                                                                                                atcgagtcggtggccgcggggcaaaccgaggccgccgaCTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATg                                                                                            <  1:997105‑M2/55‑1 (MQ=255)                                                                                                                     gtcggtggccgcggggcaaaccgaggccgccgaCTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAg                                                                    >  2:1248879‑M2/34‑112 (MQ=255)                                                                                                                     gtcggtggccgcggggcaaaccgaggccgccgaCTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAg                                                                    <  1:1248879‑M2/79‑1 (MQ=255)                                                                                                                           ggcCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGAGGTTGACGCTGGGCAGGCCAAAGTAGAAATACTg                        <  2:1188083/150‑1 (MQ=255)                                                                                                                             ccTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGAGGTTGACGCTGGGCAGGCCAAAGTAGAAATACTgca                      >  2:896839/1‑150 (MQ=255)                                                                                                                                        cccGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGAGGTTGACGCTGGGCAGGCCAAAGTAGAAATACTGCAGCAGGATCAAc           <  1:208155/150‑1 (MQ=255)                                                                                                                                                 aCCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCAGCTGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGAGGTTGACGCTGGGCAGGGCAAAGTAGAAATACTGCAGCAGGATCAACGCCGGTgcg  >  1:333353/1‑150 (MQ=255)                                                                                                                                                    gaCTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGa                                                          <  2:1153371‑M2/89‑1 (MQ=255)                                                                                                                                                    gaCTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGa                                                          >  1:1153371‑M2/3‑91 (MQ=255)                                                                                                                                                      |                                                                                                                                                 AGCGACGAGGCCTGGAACATCATGATCGAGAACCCCAGCAGCGATGGCAGCGCCACCCGCAAGGCCTGAGGCAGGATCACAAAGCGCAGCGCGTCGAACCGGTTGAGGCCGATCACTTCGGCGGCCTCGGTTTGCCCCGCGGCCACCGACTCGATGCCACCGCGAATGATTTCACTGGTGTAGGCGGCCGTGCAGTACGCCATGGCCAGCGCAGCAGCCCAGAACGAGGTCAGGGTGAGGTTGACGCTGGGCAGGCCAAAGTAGAAATACTGCAGCAGGATCAACGCCGGTGCG  >  NC_002947/5405533‑5405826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.