New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5506637	36 (0.680)	13 (0.320)	11/188	NT	29.7%	intergenic (+48/‑151)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
	?	NC_002947	= 5506650	34 (0.850)					intergenic (+61/‑138)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease

GAAGGCGGCAGTGGCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5506463‑5506637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtaaacccgctcctacAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCACCAGCGGGAA  <  NC_002947/5506650‑5506503                                                                                                                                                                                                                                                                                                                                     GAAGGCGGCAGTGGCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCC                                                                                                                                                                               >  2:78510/1‑150       GGCAGTGGCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGACGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCG                                                                                                                                                                         >  2:923113/1‑150        GCAGTGGCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGC                                                                                                                                                                        <  1:606057/150‑1        GCAGTGGCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGC                                                                                                                                                                        <  1:927394/150‑1          AGTGGCCGTGATGCTGGTGCTGGGGGTGTGGTTGCCGGTGGTGTGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGTCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGG                                                                                                                                                                      <  1:855640/150‑1          AGTGGCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGTGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGG                                                                                                                                                                      <  1:495371/150‑1              GCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTtt                                                                                                                                                                  >  1:451457/1‑148               CCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAA                                                                                                                                                                 >  1:755006/1‑150                  TGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCC                                                                                                                                                              <  2:755006/150‑1                    ATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGC                                                                                                                                                            <  2:95748/150‑1                    ATGCTGGTGCTGGAGGTGTTGTTCCCGCTGGTGGGGGTGCCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGC                                                                                                                                                            <  1:220922/150‑1                      GCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGGGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTC                                                                                                                                                          <  2:277220/150‑1                        TGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCT                                                                                                                                                        >  2:48643/1‑150                          GTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTTTACCCGCgaagag                                                                                                                                                      <  2:451457/150‑7                                         TTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGT                                                                                                                                              >  2:638589/1‑143                                         TTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGT                                                                                                                                              <  1:638589/143‑1                                            CCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACC                                                                                                                                                               <  1:1034851/123‑1                                            CCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAATTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACC                                                                                                                                                               >  2:1034851/1‑123                                             CGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGA                                                                                                                                   <  1:1293341/150‑1                                                  GTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGG                                                                                                                              <  2:481731/150‑1                                                  GTGGGGGTGGCGGTGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGG                                                                                                                              <  2:222026/150‑1                                                           TCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGG                                                                                                                                                                      <  1:648493/101‑1                                                           TCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGG                                                                                                                                                                      >  2:648493/1‑101                                                             GATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGG                                                                                                                                    >  1:993162/1‑133                                                             GATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGG                                                                                                                                    <  2:993162/133‑1                                                             GATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTG                                                                                                                                                                                  >  2:1222383/1‑87                                                             GATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTG                                                                                                                                                                                  <  1:1222383/87‑1                                                                                               GTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGG                                                                                                                               <  1:204209/104‑1                                                                                               GTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGG                                                                                                                               >  2:204209/1‑104                                                                                                    GCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGG                                                                                                                               <  2:548497/99‑1                                                                                                    GCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGG                                                                                                                               >  1:548497/1‑99                                                                                                                    GCCAGCGCTTGAGCCTTGTGTTGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCA                                                                                                           >  2:570151/1‑103                                                                                                                    GCCAGCGCTTGAGCCTTGTGTTGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCA                                                                                                           <  1:570151/103‑1                                                                                                                                            CTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                      >  1:129707/1‑36                                                                                                                                            CTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                      <  2:129707/36‑1                                                                                                                                                    GCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCA                                                                                                        >  1:432997/1‑74                                                                                                                                                    GCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCA                                                                                                        <  2:432997/74‑1                                                                                                                                                      CTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGACGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCAC                          >  2:302800/1‑150                                                                                                                                                       TCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGA                                                                        <  2:720845/103‑1                                                                                                                                                       TCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGA                                                                        >  1:720845/1‑103                                                                                                                                                       TCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGCTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACAACACCACC                         >  2:1266484/1‑150                                                                                                                                                         TTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCA                        <  2:1073940/149‑1                                                                                                                                                         TTCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCA                        >  1:1073940/1‑149                                                                                                                                                          TCGCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATC                      <  1:635429/150‑1                                                                                                                                                            GCGGGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGA                    >  2:1210863/1‑150                                                                                                                                                               GGTAAACCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACAC                 <  1:1210863/150‑1                                                                                                                                                                     CCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCAC           <  1:480704/150‑1                                                                                                                                                                     CCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCAC           >  1:46890/1‑150                                                                                                                                                                     CCCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCAC           >  1:78510/1‑150                                                                                                                                                                      CCGCTCCTACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCACC          >  1:921092/1‑150                                                                                                                                                                      CCGCTCCTACAACGCGGTCCCTCGTAAGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCTGCGCCTCACCACCATACCAACCTCCCGCCACATCACCACCATCGCCACCCCCACC          >  2:691376/1‑150                                                                                                                                                                              ACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCACCAGCGGGAA  <  1:259272/150‑1                                                                                                                                                                              ACAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCACCAGCGGGAA  <  1:2768/150‑1                                                                                                                                                                                                                                                                                                                                     GAAGGCGGCAGTGGCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5506463‑5506637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtaaacccgctcctacAACGCGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCACCAGCGGGAA  <  NC_002947/5506650‑5506503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.