New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5510261	46 (0.880)	5 (0.100)	5/238	NT	10.6%	coding (412/1488 nt)	urtB	urea ABC transporter permease
	?	NC_002947	= 5510304	40 (0.790)					coding (455/1488 nt)	urtB	urea ABC transporter permease

TCAGCGACAACAGCGAAACCCGCCTGGCCGCAGCCCAGCAACTACAGAAAAGCGCACAACCCGCGCAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5510109‑5510261 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagc‑AGGCGCACGGCGGCCAGGCGTACCGCAGGCTCGCTGGCGCCCAGCTGCAGGTTGGCCAGGGCCAGACCGAGGGCGGCCTGTACGGCGGCGTCCGGCTCGGCGGCGAAGCGCCGGTCGAGGAAGGCCATTTGCGCGGGTTGTGCGCT  <  NC_002947/5510304‑5510159                                                                                                                                                                                                                                                                                                              TCAGCGACAACAGCGAAACCCGCCTGGCCGCAGCCCAGCAACTACAGAAAAGCGCACAACCCGCGCAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGC                                                                                                                                                        >  1:269280/1‑150   AGCGACAACAGCGAAACCCGCCTGGCCGCAGCCCAGCAACTACAGAAAAGCGCACAACCCGCGCAAATGGCCTTCCACGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAG                                                                                                                                                      >  1:882484/1‑150                                    CAGCAACTACAGAAAAGCGCACAACCCGCGCAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGC                                                                                                                                                        >  1:422036/1‑115                                    CAGCAACTACAGAAAAGCGCACAACCCGCGCAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGC                                                                                                                                                        <  2:422036/115‑1                                               GAAAAGCGCACAACCCGCGCAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGC‑AGGCGCACGGCGGCCAGGCGTACCGCAGGCTCGCTGGCGCCCA                                                                                                         <  2:1276410/150‑1                                                                          CTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGC‑AGGCGCACGGCGGCCAGGCGTACCGCAGGCTCGCTGGCGCCCAGCTGCAGGTTGGCCAG                                                                                         <  1:1420044/139‑1                                                                          CTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGC‑AGGCGCACGGCGGCCAGGCGTACCGCAGGCTCGCTGGCGCCCAGCTGCAGGTTGGCCAG                                                                                         >  2:1420044/1‑139                                                                               TCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCACGGCGGCCAGGCGTACCGCAGGCTCGCTGGCGCCCAGCTGC                                                                                                    >  1:1262229/1‑124                                                                               TCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCACGGCGGCCAGGCGTACCGCAGGCTCGCTGGCGCCCAGCTGC                                                                                                    <  2:1262229/124‑1                                                                                                                                                      CAGC‑AGGCGCACGGCGGCCAGGCGTACCGCAGGCTCGCTGGCGCCCAGCTGCAGGTTGGCCAGGGCCAGACCGAGGGCGGCCTGTACGGCGGCGTCCGGCTCGGCGGCGAAGCGCCGGTCGAGGAAGGCCATTTGCGCGGGTTGTGCGCT  >  1:1369761/1‑150                                                                                                                                                                                                                                                                                                              TCAGCGACAACAGCGAAACCCGCCTGGCCGCAGCCCAGCAACTACAGAAAAGCGCACAACCCGCGCAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5510109‑5510261 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagc‑AGGCGCACGGCGGCCAGGCGTACCGCAGGCTCGCTGGCGCCCAGCTGCAGGTTGGCCAGGGCCAGACCGAGGGCGGCCTGTACGGCGGCGTCCGGCTCGGCGGCGAAGCGCCGGTCGAGGAAGGCCATTTGCGCGGGTTGTGCGCT  <  NC_002947/5510304‑5510159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.