New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5510261	46 (0.880)	5 (0.100)	5/238	NT	10.6%	coding (412/1488 nt)	urtB	urea ABC transporter permease
	?	NC_002947	= 5510304	40 (0.790)					coding (455/1488 nt)	urtB	urea ABC transporter permease

GAAAAGCGCACAACCCGCGCAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAACTAGACCCGGGCGTGCGCACAGCCGCCGAAACGAGCCTGGCCCAGGTCAAGCGCAAACTGCTGCTAGGCGAACTGCTCGGCC  >  NC_002947/5510155‑5510453                                                                                                                                                      |                                                                                                                                                      gAAAAGCGCACAACCCGCGCAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCct                                                                                                                                                       <  2:269280/150‑1 (MQ=255)     aGCGCACAACCCGCGCAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTgctg                                                                                                                                                   >  1:1369761‑M2/1‑146 (MQ=255)      gcgcACAACCCGCGCAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCGTGCGGTACGCCTGGCCGCCGTGCGCCTGCTgg                                                                                                                                                  <  2:533246/150‑1 (MQ=255)      gcgcACAACCCGCGCAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTgg                                                                                                                                                  <  1:39241/150‑1 (MQ=255)      gcgcACAACCCGCGCAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTgg                                                                                                                                                  <  1:364504/150‑1 (MQ=255)           caACCCGCGCAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGaa                                                                                                                                             >  2:326503/1‑150 (MQ=255)               ccGCGCAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCg                                                                                                                                         >  2:1412101/1‑150 (MQ=255)                cgcgCAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCgg                                                                                                                                        <  1:436686/150‑1 (MQ=255)                 gcgcAAATGGCCTTCTTCGACGGGCGCTCCGCCGCCGAGCCGGACGCCGCAGTAGAGGCCGCCGCCGGTCTCGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTTCGGTACGCCCGGGCGCCGTGGGCCTGCTGGGTGAAACCGGc                                                                                                                                       <  2:41555/150‑1 (MQ=255)                 gcgcAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGc                                                                                                                                       >  1:1177885/1‑150 (MQ=255)                     aaaTGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGAcc                                                                                                                                   >  2:1346472/1‑150 (MQ=255)                          gCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTg                                                                                                                              <  1:1412101/150‑1 (MQ=255)                              tCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGccc                                                                                                                          <  2:1177885/150‑1 (MQ=255)                              tCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGccc                                                                                                                          <  1:70719/150‑1 (MQ=255)                              tCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGccc                                                                                                                          <  2:650496/150‑1 (MQ=255)                                 tCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCa                                                                                                                       >  1:1282012/1‑150 (MQ=255)                                 tCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGACTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGcc                                                                                                                       >  2:111370/1‑149 (MQ=255)                                      gctcgcTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGc                                                                                                                  >  2:860910/4‑150 (MQ=255)                                        gcgcTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGACAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGccc                                                                                                                >  2:832485/1‑149 (MQ=255)                                                    cgAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCctgct                                                                                                    <  1:1173774/150‑1 (MQ=255)                                                          ggACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGcc                                                                                              >  2:407325/1‑150 (MQ=255)                                                              gccgccGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGAt                                                                                          <  2:839962/150‑1 (MQ=255)                                                                   cgTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGa                                                                                     >  1:1323293/1‑150 (MQ=255)                                                                    gTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGaa                                                                                    <  1:1301386/150‑1 (MQ=255)                                                                     tACAGTCCTCCCTCGTTCTGGCCCTGACCACACTGCAGCTGGGCGCCAGCGTTATTTCTGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAAc                                                                                   <  2:691128/150‑1 (MQ=255)                                                                          gccgccCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGaa                                                                                                            <  1:1332291/120‑1 (MQ=255)                                                                          gccgccCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGaa                                                                                                            >  2:1332291/1‑120 (MQ=255)                                                                              cccTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCCACGTGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAACTAGACCCgg                                                                          <  1:1084636/150‑1 (MQ=255)                                                                              cccTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAACTAGACCCgg                                                                          <  2:847346/150‑1 (MQ=255)                                                                               ccTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCGGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAACTAGACCCggg                                                                         >  1:1154718/1‑150 (MQ=255)                                                                                cTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAACTAGACCCGGGc                                                                        >  2:180510/1‑150 (MQ=255)                                                                                     tCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAg                                                                                      >  2:1143872/1‑131 (MQ=255)                                                                                     tCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAg                                                                                      <  1:1143872/131‑1 (MQ=255)                                                                                          ccctggccAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAACTAGACCCGGGCGTGCGCACAg                                                              <  2:1282012/150‑1 (MQ=255)                                                                                           cctggccAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAAGTAGACCCGGGCGTGCGCACAgc                                                             >  2:331207/1‑150 (MQ=255)                                                                                            ctggccAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTgctgcaggttggccagggccagaccgagggcggcctgtacggcggcgtccggctcggcggcgaagcgccggtcgaggaag                                                                       >  2:1420044‑M2/1‑59 (MQ=255)                                                                                            ctggccAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTgctgcaggttggccagggccagaccgagggcggcctgtacggcggcgtccggctcggcggcgaagcgccggtcgaggaag                                                                       <  1:1420044‑M2/139‑81 (MQ=255)                                                                                                 cAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGTCCGCCGTGCTCCGGCGGGGTGAAACGGGCGACCCGCTGGCCCGCACCCGCCTCGGAGCCCTGCTGCGGCCCGATGCAGAACTATACCCGAGCGTGCGCACAGCCGCCGa                                                       >  2:696005/1‑150 (MQ=255)                                                                                                    ccTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAACTAGACCCGGGCGTGCGCACAGCCGCCGAAAc                                                    <  2:1196137/150‑1 (MQ=255)                                                                                                       gCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCCagctgcaggttggccagggccagaccgagggcggcctgtacggcggcgtccggctcggcggcgaagcgccggtcga                                                                           <  2:1262229‑M2/124‑77 (MQ=255)                                                                                                       gCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCCagctgcaggttggccagggccagaccgagggcggcctgtacggcggcgtccggctcggcggcgaagcgccggtcga                                                                           >  1:1262229‑M2/1‑48 (MQ=255)                                                                                                        cAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAACTAGACCCGGGCGTGCGCACAGCCGCCGAAACGAGc                                                <  1:860910/150‑1 (MQ=255)                                                                                                         aGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAACTAGACCCGGGCGTGCGCACAGCCGCCGAAACGAGcc                                               >  1:867519/1‑150 (MQ=255)                                                                                                            tGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTgctgcaggttggccagggccagaccgagggcggcctgtacggcggcgtccggctcggcggcgaagcgccggtcgaggaaggccatttgcgcgggttgtgcgcttttc                                            <  2:1276410‑M2/150‑108 (MQ=255)                                                                                                              ggCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAACTAGACCCGGGCGTGCGCACAGCCGCCGAAACGAGCCTGGcc                                          <  2:958442/150‑1 (MQ=255)                                                                                                                cgcCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAACTAGACCCGGGCGTGCGCACAGCCGCCGAAACGAGCCTGGCCCa                                        <  2:1154718/150‑1 (MQ=255)                                                                                                                                gTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAACTAGACCCGGGCGTGCGCACAGCCGCCGAAACGAGCCTGGCCCAGGTCAAGCGCAAActg                        <  1:180510/150‑1 (MQ=255)                                                                                                                                    gCCTGGCTGCCCAGGACCTGCTCGGTGAAACCGGCGCCACGCTGGCCCGCACCCGCCTCGATGCCCTGCTGCAGCCCGATGCAGAACTAGACCCGGGCGTGCGCACAGCCGCCGAAACGAGCCTGGCCCAGGTCAAGCGCAAACtgctgc                    >  2:728879/1‑150 (MQ=255)                                                                                                                                    gCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAACTAGACCCGGGCGTGTGCACAGCCGCCGAAACGAGCCTGGCCCAGGTCAAGCGCAAACtgctgc                    >  2:715007/1‑150 (MQ=255)                                                                                                                                            gccgTGCCCCTTCTGGGTTAACCCGGAGACCAGCTGGCCCGCCCACGCCTAGACGCTCGGCCACAGCACCATGCAGCACAAGACCCGGGCCTGCGCACAGCCGCCGAACCGAGCCGGGACCAGGTCAAGCGCAAACTGCTGCTAGGCGaa            <  2:204758/150‑1 (MQ=255)                                                                                                                                                    ccTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAACTAGACCCGGGCGTGCGCACAGCCGCCGAAACGAGCCTGGCCCAGGTCAAGCGCAAACTGCTGCTAGGCGAACTGCTCgg    >  2:425819/1‑150 (MQ=255)                                                                                                                                                     ctgctgGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAACTAGACCCGGGCGTGCGCACAGCCGCCGAAACGAGCCTGGCCCAGGTCAAGCGCAAACTGCTGCTAGGCGAACTGCTCGGc   >  1:1017796/1‑150 (MQ=255)                                                                                                                                                      tgctgGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCGGCTGCAGCCCGATGCAGAACTAGACCCGGGCGTGCGCACAGCCGCCGAAACGAGCCTGGCCCAGGTCAAGCGCAAACTGCTGCTAGGCGAACTGCTCGGcc  >  2:125206/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GAAAAGCGCACAACCCGCGCAAATGGCCTTCCTCGACCGGCGCTTCGCCGCCGAGCCGGACGCCGCCGTACAGGCCGCCCTCGGTCTGGCCCTGGCCAACCTGCAGCTGGGCGCCAGCGAGCCTGCGGTACGCCTGGCCGCCGTGCGCCTGCTGGGTGAAACCGGCGACCCGCTGGCCCGCACCCGCCTCGAAGCCCTGCTGCAGCCCGATGCAGAACTAGACCCGGGCGTGCGCACAGCCGCCGAAACGAGCCTGGCCCAGGTCAAGCGCAAACTGCTGCTAGGCGAACTGCTCGGCC  >  NC_002947/5510155‑5510453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.