New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5581781	46 (0.880)	4 (0.080)	4/238	NT	8.2%	coding (765/1458 nt)	PP_4910	hypothetical protein
	?	NC_002947	= 5581807	45 (0.890)					coding (791/1458 nt)	PP_4910	hypothetical protein

CAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5581629‑5581781 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaACCTTGGCGCGCGGTGCGGCCTTGGGTGCCGGGGCCGCTGCGTGCAGGTCGTCGAACTGCTCGTCGTCGTCTTCCTCGGGCTCCGGCTCCGGGGGCGGAGGCGGGGCCAGGCGTGCATGCAGCTGGCGGGCGATGTCGCCAATCTCGTC  <  NC_002947/5581807‑5581659                                                                                                                                                                                                                                                                                                                aAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCG                                                                                                                                                          <  2:620700/149‑1                                                             CATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCAACCTTGGCGCGCGGTGCGGCCTTGGGTGCCGGG                                                                                                                      >  1:1168304/1‑126                                                             CATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCAACCTTGGCGCGCGGTGCGGCCTTGGGTGCCGGG                                                                                                                      <  2:1168304/126‑1                                                                                                                   GACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCAACCTTGGCGCGCGGTGCGGCCTTGG                                                                                                                              <  1:331135/64‑1                                                                                                                   GACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCAACCTTGGCGCGCGGTGCGGCCTTGG                                                                                                                              >  2:331135/1‑64                                                                                                                                                      GGCAACCTTGGCGCGCGGTGCGGCCTTGGGTGCCGGGGCCGCTGCGTGCAGGTCGTCGAACTGCTCGTCGTCGTCTTCCTCGGGCTCCGGCTCCGGGGGCGGAGGCGGGGCCAGGCGTGCATGCAGCTGGCGGGCGATGTCGCCAATCTC     <  2:132603/150‑1                                                                                                                                                       GCAACCTTGGCGCGCGGTGCGGCCTTGGGTGCCGGGGCCGCTGCGTGCAGGTCGTCGAACTGCTCGTCGTCGTCTTCCTCGGGCTCCGGCTCCGGGGGCGGAGGCGGGGCCAGGCGTGCATGCAGCTGGCGGGCGATGTCGCCAATCTCG    <  2:1368319/150‑1                                                                                                                                                         AACCTTGGCGCGCGGTGCGGCCTTGGGTGCCGGGGCCGCTGCGTGCAGGTCGTCGAACTGCTCGTCGTCGTCTTCCTCGGGCTCCGGCTCCGGGGGCGGAGGCGGGGCCAGGCGTGCATGCAGCTGGCGGGCGATGTCGCCAATCTCGTC  >  1:254244/1‑150                                                                                                                                                                                                                                                                                                                CAGCCCTATACCCCGGCCACCGACCGCCAGGACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5581629‑5581781 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaACCTTGGCGCGCGGTGCGGCCTTGGGTGCCGGGGCCGCTGCGTGCAGGTCGTCGAACTGCTCGTCGTCGTCTTCCTCGGGCTCCGGCTCCGGGGGCGGAGGCGGGGCCAGGCGTGCATGCAGCTGGCGGGCGATGTCGCCAATCTCGTC  <  NC_002947/5581807‑5581659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.