New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5581781	46 (0.880)	4 (0.080)	4/238	NT	8.2%	coding (765/1458 nt)	PP_4910	hypothetical protein
	?	NC_002947	= 5581807	45 (0.890)					coding (791/1458 nt)	PP_4910	hypothetical protein

GACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAGCCGCAGTACAGCGCTGTGCTTGCCGTGCAGCTGGGCTCGCAGGAGCAACTGCGTC  >  NC_002947/5581659‑5581956                                                                                                                                                     |                                                                                                                                                      gACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTt                                                                                                                                                      >  1:254244‑M2/1‑149 (MQ=255)   cGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTtgc                                                                                                                                                    <  2:1368319‑M2/150‑4 (MQ=255)    gagaTTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTtgcc                                                                                                                                                   <  2:132603‑M2/150‑5 (MQ=255)      gaTTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCt                                                                                                                                                 >  1:753172/1‑150 (MQ=255)         cggCGACACCGCCCGCCAGCTGGATCCACGCCTGGCCCCGCCTGCGCCCCCGGAGCCGGAGCCCGAGGAAGAGGACGACGAGCGGTTCGACGACCTGCACGCGGCGGACCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGa                                                                                                                                              <  2:157197/149‑1 (MQ=255)               cATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGa                                                                                                                                        <  2:625486/150‑1 (MQ=255)               cATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGa                                                                                                                                        <  2:902077/150‑1 (MQ=255)               cATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGa                                                                                                                                        <  2:1356837/150‑1 (MQ=255)                aTCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAg                                                                                                                                       >  1:385792/1‑150 (MQ=255)                 tCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCCGTTCGACAACCTGCACGCAGCGGCCCCGGCACCCAAGGCGCTACCCGGCGCCAAGGTTGCCCTGGAAGACGAgg                                                                                                                                      >  1:1315237/1‑150 (MQ=255)                  cgcccgccAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGa                                                                                                                                     <  2:91124/150‑1 (MQ=255)                     ccgccAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATga                                                                                                                                  >  2:1310154/1‑150 (MQ=255)                      cgccAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAGGACGAGGATgac                                                                                                                                 <  2:830577/150‑1 (MQ=255)                        ccAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATgacga                                                                                                                               <  1:578596/150‑1 (MQ=255)                        ccAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATgacga                                                                                                                               <  2:385792/150‑1 (MQ=255)                                             cccGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCGAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCctgct                                                                                                          >  1:599907/1‑150 (MQ=255)                                                   tCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCGAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGgacga                                                                                                    <  2:599907/150‑1 (MQ=255)                                                      gCCCCCGGAGCCGGAGCCCGAGGACGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCACACCGCGCGCCATGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGgacgacga                                                                                                 >  2:518563/1‑150 (MQ=255)                                                        gggcggaggcggggcCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGaca                                                                                               <  2:235088/147‑1 (MQ=255)                                                            ggagccggagccCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGc                                                                                           >  1:343894/1‑150 (MQ=255)                                                               gccggagccCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGcccc                                                                                        <  1:284235/150‑1 (MQ=255)                                                                  ggagccCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCaa                                                                                     >  1:382478/1‑150 (MQ=255)                                                                   gggccCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCaaa                                                                                    <  1:1260605/148‑1 (MQ=255)                                                                    agccCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACATTGCCCCCAAAg                                                                                   <  2:753172/150‑1 (MQ=255)                                                                           ggAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCcgccgc                                                                            >  2:124284/1‑150 (MQ=255)                                                                              aGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCaga                                                                         <  1:1083422/150‑1 (MQ=255)                                                                              aGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCaga                                                                         >  2:417421/1‑150 (MQ=255)                                                                              aGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCaga                                                                         <  2:1005787/150‑1 (MQ=255)                                                                              aGACGACGACGAGCAGTTCGACGACCTACACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCaga                                                                         <  1:1368319/150‑1 (MQ=255)                                                                                          gCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCcga                                                             <  1:409350/150‑1 (MQ=255)                                                                                              ttCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAg                                                         >  1:963047/1‑150 (MQ=255)                                                                                              ttCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAg                                                         >  2:1252005/1‑150 (MQ=255)                                                                                              ttCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAg                                                         >  1:403812/1‑150 (MQ=255)                                                                                                 gacgacCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGgacgacga                                                                                                 >  2:318392/1‑107 (MQ=255)                                                                                                 gacgacCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGgacgacga                                                                                                 <  1:318392/107‑1 (MQ=255)                                                                                                        tGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGAAGAGCCGCAGTACa                                               <  2:1392093/150‑1 (MQ=255)                                                                                                          cACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAGCCGCAGTACAgc                                             <  1:132603/150‑1 (MQ=255)                                                                                                           aCGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAGCCGCAGTACAgcg                                            <  2:403812/150‑1 (MQ=255)                                                                                                           aCGCAGCGGCCCCGGAACCCAAGGCCGCACCTCTCTCCAAGGTTGCGCTGGAAGAAGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACGGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAGCCGCAGTACAgcg                                            <  1:608904/150‑1 (MQ=255)                                                                                                               aGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAACGCCGCCGCAGAGGTCGAGTCCGACGAGCCGCAGTACAGCGCtgt                                        <  2:592995/150‑1 (MQ=255)                                                                                                                   gCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAGCCGCAGTACAGCGCTGTGCtt                                    >  1:625263/1‑150 (MQ=255)                                                                                                                     cccGGCACCCAAGGCCGCACCGCGCGCCAAGGTtgccggggccgctgcgtgcaggtcgtcgaactgctcgtcgtcgtcttcctcgggctccggctccgggggcggaggcggggccaggcgtgcatg                                                          <  2:1168304‑M2/126‑94 (MQ=255)                                                                                                                     cccGGCACCCAAGGCCGCACCGCGCGCCAAGGTtgccggggccgctgcgtgcaggtcgtcgaactgctcgtcgtcgtcttcctcgggctccggctccgggggcggaggcggggccaggcgtgcatg                                                          >  1:1168304‑M2/1‑33 (MQ=255)                                                                                                                       cGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAGCCGCAGTACAGCGCTGTGCTTGCCg                                >  2:421747/1‑150 (MQ=255)                                                                                                                       cGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAGCCGCAGTACAGCGCTGTGCTTGCCg                                >  2:863549/1‑150 (MQ=255)                                                                                                                             ccAAGGCCGCACCGCGCGCCAAGGTtgccggggccgctgcgtgcaggtcgtcgaactgctcgtc                                                                                                                >  2:331135‑M2/1‑25 (MQ=255)                                                                                                                             ccAAGGCCGCACCGCGCGCCAAGGTtgccggggccgctgcgtgcaggtcgtcgaactgctcgtc                                                                                                                <  1:331135‑M2/64‑40 (MQ=255)                                                                                                                                aGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAGCCGCAGTACAGCGCTGTGCTTGCCGTGCAGCTgg                       <  2:343894/150‑1 (MQ=255)                                                                                                                                aGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAGCCGCAGTACAGCGCTGTGCTTGCCGTGCAGCTgg                       >  2:1215651/1‑150 (MQ=255)                                                                                                                                          gcgcgcCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGTCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAGCCGCAGTACAGCGCTGTGCTTGCCGTGCAGCTGGGCTCGCAGGa             <  1:537538/150‑1 (MQ=255)                                                                                                                                          gcgcgcCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAGCCGCAGTACAGCGCTGTGCTTGCCGTGCAGCTGGGCTCGCAGGa             <  1:124284/150‑1 (MQ=255)                                                                                                                                            gcgcCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAGCCGCAGTACAGCGCTGTGCTTGCCGTGCAGCTGGGCTCGCAGGAGc           <  1:1215651/150‑1 (MQ=255)                                                                                                                                                cAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCcgac                                                            <  1:893684/97‑1 (MQ=255)                                                                                                                                                cAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCcgac                                                            >  2:893684/1‑97 (MQ=255)                                                                                                                                                 aaGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAg                                                         <  1:102805/99‑1 (MQ=255)                                                                                                                                                 aaGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAg                                                         >  2:102805/1‑99 (MQ=255)                                                                                                                                                     ttGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAGCCGCAGTACAGCGCTGTGCTTGCCGTGCAGCTGGGCTCGCAGGAGCAACTGCGTc  <  1:518563/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      GACGAGATTGGCGACATCGCCCGCCAGCTGCATGCACGCCTGGCCCCGCCTCCGCCCCCGGAGCCGGAGCCCGAGGAAGACGACGACGAGCAGTTCGACGACCTGCACGCAGCGGCCCCGGCACCCAAGGCCGCACCGCGCGCCAAGGTTGCCCTGGAAGACGAGGATGACGACGAAGCCTTCGCCGGCCTGCTGGACGACGACACTGCCCCCAAAGCCGCCGCAGAGGTCGAGTCCGACGAGCCGCAGTACAGCGCTGTGCTTGCCGTGCAGCTGGGCTCGCAGGAGCAACTGCGTC  >  NC_002947/5581659‑5581956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.