| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5755142 | 62 (1.180) | 5 (0.100) | 5/236 | NT | 7.7% | coding (200/1437 nt) | glnG | two‑component system DNA‑binding response regulator GlnL/GlnG |
| ? | NC_002947 | = 5755156 | 60 (1.190) | coding (214/1437 nt) | glnG | two‑component system DNA‑binding response regulator GlnL/GlnG | |||||
AACAGGAAGGCATGACCACCCAGAGCTTCGACAGCGCAGACGGTGTCATGGGGCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGAC‑‑‑CTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5755016‑5755142‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctCGCGGATCTGCGCCAGCAGGTCGAGGCCGCTGGTGCCAGGCATGCGAATGTCGGAAATGATCACGTCGGGTTGCTGACGTGCCAGGCGCCCCATGACACCGTCTGCGCTGTCGAAGCTCTGGGTGGTCATGCCTTCCTGTTGCAGGGCT < NC_002947/5755156‑5755008 AACAGGAAGGCATGACCACCCAGAGCTTCGACAGCGCAGACGGTGTCATGGGGCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGACCTGCTGCTCGCGGATCTGCGCCAGCAGG < 2:303354/150‑1 TTCGACAGCGCAGACGGTGTCATGGGGCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGAC‑‑‑C < 1:271796/97‑1 TTCGACAGCGCAGACGGTGTCATGGGGCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGAC‑‑‑C > 2:271796/1‑97 CATGCCTGGCACCAGCGGCCTCGAC‑‑‑CTGCTCGCGGATCTGCGCCAGCAGGTCGA > 1:754958/1‑54 CATGCCTGGCACCAGCGGCCTCGAC‑‑‑CTGCTCGCGGATCTGCGCCAGCAGGTCGA < 2:754958/54‑1 CTCGAC‑‑‑CTGCTGGCGCAGATCCGCGAGCAGGTCGAGGCCGCTGGTGCCAGGCATGCGAATGTCGGAAATGATCACGTCGGG > 1:564542/1‑81 CTCGAC‑‑‑CTGCTGGCGCAGATCCGCGAGCAGGTCGAGGCCGCTGGTGCCAGGCATGCGAATGTCGGAAATGATCACGTCGGG < 2:564542/81‑1 TGCTCGCGGATCTGCGCCAGCAGGTCGAGGCCGCTGGTGCCAGGCATGCGAATGTCGGAAATGATCACGTCGGGTTGCTGACGTGCCAGGCGCCCCATGACACCGTCTGCGCTGTCGAAGCTCTGGGTGGTCATGCCTTCCTGTTGCAGG > 2:240360/1‑150 CTCGCGGATCTGCGCCAGCAGGTCGAGGCCGCTGGTGCCAGGCATGCGAATGTCGGAAATGATCACGTCGGGTTGCTGACGTGCCAGGCGCCCCATGACACCGTCTGCGCTGTCGAAGCTCTGGGTGGTCATGCCTTCCTGTTGCAGGGC < 1:240360/150‑1 CTCGCGGATCTGCGCCAGCAGGTCGAGGCCGCTGGTGCCAGGCATGCGAATGTCGGAAATGATCACGTCGGGTTGCTGACGTGCCAGGCGCCCCATGACACCGTCTGCGCTGTCGAAGCTCTGGGTGGTCATGCCTTCCTGTTGCA > 1:1335239/1‑146 CTCGCGGATCTGCGCCAGCAGGTCGAGGCCGCTGGTGCCAGGCATGCGAATGTCGGAAATGATCACGTCGGGTTGCTGACGTGCCAGGCGCCCCATGACACCGTCTGCGCTGTCGAAGCTCTGGGTGGTCATGCCTTCCTGTTGCA < 2:1335239/146‑1 TCGCGGATCTGCGCCAGCAGGTCGAGGCCGCTGGTGCCAGGCATGCGAATGTCGGAAATGATCACGTCGGGTTGCTGACGTGCCAGGCGCCCCATGACACCGTCTGCGCTGTCGAAGCTCTGGGTGGTCATGCCTTCCTGTTGCAGGGCT > 1:668699/1‑150 TCGCGGATCTGCGCCAGCAGGTCGAGGCCGCTGGTGCCAGGCATGCGAATGTCGGAAATGATCACGTCGGGTTGCTGACGTGCCAGGCGCCCCATGACACCGTCTGCGCTGTCGAAGCTCTGGG < 1:877086/124‑1 TCGCGGATCTGCGCCAGCAGGTCGAGGCCGCTGGTGCCAGGCATGCGAATGTCGGAAATGATCACGTCGGGTTGCTGACGTGCCAGGCGCCCCATGACACCGTCTGCGCTGTCGAAGCTCTGGG > 2:877086/1‑124 AACAGGAAGGCATGACCACCCAGAGCTTCGACAGCGCAGACGGTGTCATGGGGCGCCTGGCACGTCAGCAACCCGACGTGATCATTTCCGACATTCGCATGCCTGGCACCAGCGGCCTCGAC‑‑‑CTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5755016‑5755142‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctCGCGGATCTGCGCCAGCAGGTCGAGGCCGCTGGTGCCAGGCATGCGAATGTCGGAAATGATCACGTCGGGTTGCTGACGTGCCAGGCGCCCCATGACACCGTCTGCGCTGTCGAAGCTCTGGGTGGTCATGCCTTCCTGTTGCAGGGCT < NC_002947/5755156‑5755008 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |