New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 576447542 (0.800)6 (0.120) 4/232 NT 14.0% coding (400/1317 nt) ctpA carboxy‑terminal‑processing protease
?NC_002947 = 5764490 34 (0.690)coding (415/1317 nt) ctpA carboxy‑terminal‑processing protease

TTAGCAACCTTGACCCGCATTCGGCCTACCTCGGCCCCGAGGACTTCCAGGAGCTGCAGGAAAGCACCAGCGGCGAGTTCGGCGGGCTGGGCATTGAAGTAGGCCAGGAAGACGGCTTCATCAAGGTAGTTTCGCCAATCGACGACACCCCAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5764320‑5764475
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcct‑GCACGCCGGCACGCGAGGCTGGGGTGTCGTCGATTGGCGAAACTACCTTGATGAAGCCGTCTTCCTGGCCTACTTCAATGCCCAGCCCGCCGAACTCGCCGCTGGTGCTTTCCTGCAGCTCCTGGAAGTCCTCGGGGCCGAGGTAGGCC  <  NC_002947/5764490‑5764342
                                                                                                                                                                                                                                                                                                                  
TTAGCAACCTTGACCCGCATTCGGCCTACCTCGGCCCCGAGGACTTCCAGGAGCTGCAGGAAAGCACCAGCGGCGAGTTCGGCGGGCTGGGCATTGAAGTAGGCCAGGAAGACGGCTTCATCAAGGTAGTTTCGCCAATCGACGACACCC                                                                                                                                                              <  2:1112492/150‑1
     AACCTTGACCCGCATTCGGCCTACCTCGGCCCCGAGGACTTCCAGGAGCTGCAGGAAAGCACCAGCGGCGAGTTCGGCGGGCTGGGCATTGAAGTAGGCCAGGAAGACGGCTTCATCAAGGTAGTTTCGCCAATCGACGACACCCCAGCC                                                                                                                                                         <  2:1346892/150‑1
                             CTCGGCCCCGAGGACTTCCAGGAGCTGCAGGAAAGCACCAGCGGCGAGTTCGGCGGGCTGGGCATTGAAGTAGGCCAGGAAGACGGCTTCATCAAGGTAGTTTCGCCAATCGACGACACCCCGGCCT‑GCACGCCGGCACGCGAGGCTGGG                                                                                                                                <  1:176264/150‑1
                             CTCGGCCCCGAGGACTTCCAGGAGCTGCAGGAAAGCACCAGCGGCGAGTTCGGCGGGCTGGGCATTGAAGTAGGCCAGGAAGACGGCTTCATCAAGGTAGTTTCGCCAATCGACGACACCCCAGCCT‑GCACGCCGGCACGCGAGGCTGGG                                                                                                                                <  2:672410/150‑1
                                                                                             TTGAAGTAGGCCAGGAAGACGGCTTCATCAAGGTAGTTTCGCCAATCGACGACACCCCAGCCT‑GCACGCCGGCACGCGAGGCTGGG                                                                                                                                >  1:1013768/1‑86
                                                                                             TTGAAGTAGGCCAGGAAGACGGCTTCATCAAGGTAGTTTCGCCAATCGACGACACCCCAGCCT‑GCACGCCGGCACGCGAGGCTGGG                                                                                                                                <  2:1013768/86‑1
                                                                                                                                        AATCGACGACACCCCAGCCTCGCGTGCCGGCGTGC‑AGGCTGGGGTGTCGTCGATTGGCGAAACTACCTTGATGAAGCCGTCTTCCTGGCCTACTTCAATGCCCAGCCCGCCGAACTCGCCGCTGGTGCTTTCCTGCAGCTCCTGGAAGTC                     >  1:486143/1‑150
                                                                                                                                         ATCGACGACACCCCAGCCTCGCGTGCCGGCGTGC‑AGGCTGGGGTGTCGTCGATTGGCGAAACTACCTTGATGAAGCCGTCTTCCTGGCCTACTTCAATGCCCAGCCCGCCGAACTCGCCGCTGGTGCTTTCCTGCAGCTCCTGGAAGTCC                    <  2:486143/150‑1
                                                                                                                                                      CAGCCT‑GCACGCCGGCACGCGAGGCTGGGGTGTCGTCGATTGGCGAAACTACCTTGATGAAGCCGTCTTCCTGGCCTACTTCAATGCCCAGCCCGCCGAACTCGCCGCTGGTGCTTTCCTGCAGCTCCTGGAAGTCCTCGGGGCCGAGGT       >  2:174993/1‑150
                                                                                                                                                      CAGCCT‑GCACGCCGGCACGCGAGGCTGGGGTGTCGTCGATTGGCGAAACTACCTTGATGAAGCCGTCTTCCTGGCCTACTTCAATGCCCAGCCCGCCGAACTCGCCGCTGGTGCTTTCCTGCAGCTCCTGGAA                        <  1:50673/133‑1
                                                                                                                                                      CAGCCT‑GCACGCCGGCACGCGAGGCTGGGGTGTCGTCGATTGGCGAAACTACCTTGATGAAGCCGTCTTCCTGGCCTACTTCAATGCCCAGCCCGCCGAACTCGCCGCTGGTGCTTTCCTGCAGCTCCTGGAA                        >  2:50673/1‑133
                                                                                                                                                      CAGCCT‑GCACGCCGGCACGCGAGGCTGGGGTGTCGTCGATTGGCGAAACTACCTTGATGAAGCCGTCTTCCTGGCCTACTTCAATGCCCAGCCCGCCCTATTCGCCGCTGGTGCTTTCCTGCAGCTCCTGGAAGTCCTCGGGGCCGAGGT       >  1:1155893/1‑150
                                                                                                                                                      CAGCCT‑GCACGCCGGCACGCGAGGCTGGGGTGTCGTCGATTGGCGAAACTACCTTGATGAAGCCGTCTTCCTGGCCTACCTAAAAGCCCAACCCGGCGTACTCTCCGCTGGTGCTTTCCTGCAGCTCCTGGAAGTCCTCGGGGCCGAGGT       >  1:526183/1‑150
                                                                                                                                                          CT‑GCACGCCGGCACGCGAGGCTGGGGTGTCGTCGATTGGCGAAACTACCTTGATGAAGCCGTCTTCCTGGCCTACTTCAATGCCCAGCCCGCCGAACTCGCCGCTGGTGCTTTCCTGCAGCTCCTGGAAGTCCTCGGGGCCGAGGTAGGC   >  1:1077266/1‑150
                                                                                                                                                           T‑GCACGCCGGCACGCGAGGCTGGGGTGTCGTCGATTGGCGAAACTACCTTGATGAAG                                                                                               <  1:76043/57‑1
                                                                                                                                                           T‑GCACGCCGGCACGCGAGGCTGGGGTGTCGTCGATTGGCGAAACTACCTTGATGAAG                                                                                               >  2:76043/1‑57
                                                                                                                                                           T‑GCACGCCGGCACGCGAGGCTGGGGTGTCGTCGATTGGAGACCTAACGATCAGGGAGCCGTCTTCCTGGCCTACTTCAATGCCCAGCCCGCCGAACTCGCCGCTGGTGCTTTCCTGCAGCTCCTGGAAGTCCTCGGGGCCGAGGTAGGCC  <  2:397605/150‑1
                                                                                                                                                                                                                                                                                                                  
TTAGCAACCTTGACCCGCATTCGGCCTACCTCGGCCCCGAGGACTTCCAGGAGCTGCAGGAAAGCACCAGCGGCGAGTTCGGCGGGCTGGGCATTGAAGTAGGCCAGGAAGACGGCTTCATCAAGGTAGTTTCGCCAATCGACGACACCCCAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5764320‑5764475
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcct‑GCACGCCGGCACGCGAGGCTGGGGTGTCGTCGATTGGCGAAACTACCTTGATGAAGCCGTCTTCCTGGCCTACTTCAATGCCCAGCCCGCCGAACTCGCCGCTGGTGCTTTCCTGCAGCTCCTGGAAGTCCTCGGGGCCGAGGTAGGCC  <  NC_002947/5764490‑5764342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.