| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5784952 | 53 (1.010) | 6 (0.120) | 6/228 | NT | 11.0% | intergenic (+62/‑101) | kefA/PP_5068 | intermediate mechanosensitive channel protein/hypothetical protein |
| ? | NC_002947 | = 5784997 | 48 (0.990) | intergenic (+107/‑56) | kefA/PP_5068 | intermediate mechanosensitive channel protein/hypothetical protein | |||||
GGTAGAGGTGTTCCTGATGGATGCGAAGGGCAGCAAGCAGCAATTGATTCCGATGGAACAGCCAAAATCGGATGGCACTGCTTCGGCCTGAATGGGCTCGAATACTTTATTGTGTGCAAAATGGCTGCGAGGGCTTCGCCCTCGTTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5784800‑5784952‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtGAGCCCGCCCCCACAGCGGCCAGCGCCCGATTTAGGAGCGGGTTTACCCGCGAA < NC_002947/5784997‑5784944 GGTAGAGGTGTTCCTGATGGATGCGAAGGGCAGCAAGCAGCAATTGATTCCGATGGAACAGCCAAAATCGGATGGCACTGCTTCGGCCTGAATGGGCTCGAATACTTTATTGTGTGCAAAATGGCTGCGAGGGCTTCGCCCTCGTTCGCG > 2:1423724/1‑150GGTAGAGGTGTTCCTGATGGATGCGAAGGGCAGCAAGCAGCAATTGATTCCGATGGAACAGCCAAAATCGGATGGCACTGCTTCGGCCTGAATGGGCTCGAATACTTTATTGTGTGCAAAATGGCTGCGAGGGCTTCGCACTCGTTCTCG < 2:1380738/150‑1 AATGGGCTCGAATACTTTATTGTGTGCAAAATGGCTGCGAGGGCTTCGCCCTCGTTCGCGGGTGAGCCCGCCCCCACAGCGGCCAGCGCCCGATTTAGGAGCGGGTTTACC < 1:43082/111‑1 AATGGGCTCGAATACTTTATTGTGTGCAAAATGGCTGCGAGGGCTTCGCCCTCGTTCGCGGGTGAGCCCGCCCCCACAGCGGCCAGCGCCCGATTTAGGAGCGGGTTTACC > 2:43082/1‑111 TTTATTGTGTGCAAAATGGCTGCGAGGGCTTCGCCCTCGTTCGCGGGTGAGCCCGCCCCCACAGCGGCCAGCGCCCGATTTAGGAGCGGGTTTACCCGCGAA > 1:794522/1‑102 TTTATTGTGTGCAAAATGGCTGCGAGGGCTTCGCCCTCGTTCGCGGGTGAGCCCGCCCCCACAGCGGCCAGCGCCCGATTTAGGAGCGGGTTTACCCGCGAA < 2:794522/102‑1 TGCAAAATGGCTGCGAGGGCTTCGCCCTCGTTCGCGGGTGAGCCCGCCCCCACAGCGGCCAGCGCCCGATTTAGGAGCGG < 1:192279/80‑1 TGCAAAATGGCTGCGAGGGCTTCGCCCTCGTTCGCGGGTGAGCCCGCCCCCACAGCGGCCAGCGCCCGATTTAGGAGCGG > 2:192279/1‑80 GGTAGAGGTGTTCCTGATGGATGCGAAGGGCAGCAAGCAGCAATTGATTCCGATGGAACAGCCAAAATCGGATGGCACTGCTTCGGCCTGAATGGGCTCGAATACTTTATTGTGTGCAAAATGGCTGCGAGGGCTTCGCCCTCGTTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5784800‑5784952‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtGAGCCCGCCCCCACAGCGGCCAGCGCCCGATTTAGGAGCGGGTTTACCCGCGAA < NC_002947/5784997‑5784944 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |