New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5798299 =	40 (0.760)	6 (0.120)	6/232	NT	14.3%	intergenic (‑344/+30)	gltB/PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
	?	NC_002947	5798321 =	34 (0.690)					intergenic (‑366/+8)	gltB/PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein

TTTCGCCAACCGCGACGCAGCGGTTGCGGCAATCAAGAACTTGCCAGCGAAGGTCCAGGCTGGTAAACCTTGGCCACGTACCGTCGGCAGCGTCCAACAAGAGCTGGCCACGGCCCGCTGATACCTTCCGGGCGGCATCACCCCGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5798449‑5798299 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcccGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGAC  >  NC_002947/5798321‑5798466                                                                                                                                                                                                                                                                                                           TTTCGCCAACCGCGACGCAGCGGTTGCGGCAATCAAGAACTTGCCAGCGAAGGTCCAGGCTGGTAAACCTTGGCCACGTACCGTCGGCAGCGTCCAACAAGAGCTGGCCACGGCCCGCTGATACCTTCCGGGCGGCATCACCCCGCCGCC                                                                                                                                                     <  2:598698/150‑1                                                                                                                             CTTCCGGGCGGCATCACCCCGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCC                                                                            >  1:477939/1‑99                                                                                                                             CTTCCGGGCGGCATCACCCCGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCC                                                                            <  2:477939/99‑1                                                                                                                              TTCCGGGCGGCATCACCCCGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGAC                                                                       <  1:162643/103‑1                                                                                                                              TTCCGGGCGGCATCACCCCGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGAC                                                                       >  2:162643/1‑103                                                                                                                               TCCGGGCGGCATCACCCCGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGG                                                                                            >  1:1084957/1‑81                                                                                                                               TCCGGGCGGCATCACCCCGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGG                                                                                            <  2:1084957/81‑1                                                                                                                                                    GCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGAC  >  2:599854/1‑150                                                                                                                                                                                                                                                                                                           TTTCGCCAACCGCGACGCAGCGGTTGCGGCAATCAAGAACTTGCCAGCGAAGGTCCAGGCTGGTAAACCTTGGCCACGTACCGTCGGCAGCGTCCAACAAGAGCTGGCCACGGCCCGCTGATACCTTCCGGGCGGCATCACCCCGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5798449‑5798299 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcccGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGCGGTTGGCGAAACTGCCGTAAGTCACGAC  >  NC_002947/5798321‑5798466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.