New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5798299 =	40 (0.760)	6 (0.120)	6/232	NT	14.3%	intergenic (‑344/+30)	gltB/PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
	?	NC_002947	5798321 =	34 (0.690)					intergenic (‑366/+8)	gltB/PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein

CCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGC  >  NC_002947/5798151‑5798438                                                                                                                                                     |                                                                                                                                            ccATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTgg                                                                                                                                            <  2:8868/150‑1 (MQ=255)   gtcgtgacttacggcagtttcgccaaccgcgacgcagcggttgcggcaatcaagaacttgccagcgaaggtccaggctggtaaaccttggccacgtaccgtcggcagcgtccaacaagagctggccacggcccgctgataccttccGggc                                                                                                                                          >  2:599854‑M1/147‑150 (MQ=255)           tGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGt                                                                                                                                  <  1:509519/150‑1 (MQ=255)             aTAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGt                                                                                                                                  <  2:99211/148‑1 (MQ=255)             aTAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGt                                                                                                                                  >  1:99211/1‑148 (MQ=255)                    cTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATgccgcc                                                                                                                         <  2:635779/150‑1 (MQ=255)                                  gAAGCGTTTCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGaa                                                                                                                    >  2:834642/1‑141 (MQ=255)                                  gAAGCGTTTCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGaa                                                                                                                    <  1:834642/141‑1 (MQ=255)                                    aGCGTTTCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCgg                                                                                                         <  2:608006/150‑1 (MQ=255)                                         ttCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGt                                                                                                    <  1:1132061/150‑1 (MQ=255)                                          tCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTg                                                                                                   <  1:119828/150‑1 (MQ=255)                                               cATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAg                                                                                              >  2:1164245/1‑150 (MQ=255)                                                     tGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCttg                                                                                        <  1:149639/150‑1 (MQ=255)                                                      gCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCttgt                                                                                       <  2:1151585/150‑1 (MQ=255)                                                       cAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCttgtt                                                                                      <  1:1204514/150‑1 (MQ=255)                                                             aGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGc                                                                                >  1:1356367/1‑150 (MQ=255)                                                                     tgGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGAc                                                                                  >  2:562234/1‑140 (MQ=255)                                                                     tgGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGAc                                                                                  <  1:562234/140‑1 (MQ=255)                                                                        gtccaggctggtaaaccttggccacgtaccgtcggcagcgtccaacaagagctggccacggcccgctgataccttccGGGCGGCGGGGTGATGCCGCCCGGaa                                                                                                                    <  1:162643‑M1/26‑1 (MQ=255)                                                                        gtccaggctggtaaaccttggccacgtaccgtcggcagcgtccaacaagagctggccacggcccgctgataccttccGGGCGGCGGGGTGATGCCGCCCGGaa                                                                                                                    >  2:162643‑M1/78‑103 (MQ=255)                                                                           gCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGt                                                                                                                 <  1:244463/103‑1 (MQ=255)                                                                           gCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGt                                                                                                                 >  2:244463/1‑103 (MQ=255)                                                                             ggctggtaaaccttggccacgtaccgtcggcagcgtccaacaagagctggccacggcccgctgataccttccGGGCGGCGGGGTGATGCCGCCCGGAAg                                                                                                                   <  2:477939‑M1/27‑1 (MQ=255)                                                                             ggctggtaaaccttggccacgtaccgtcggcagcgtccaacaagagctggccacggcccgctgataccttccGGGCGGCGGGGTGATGCCGCCCGGAAg                                                                                                                   >  1:477939‑M1/73‑99 (MQ=255)                                                                                  gggACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAg                                                           >  1:430349/1‑150 (MQ=255)                                                                                       aGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTa                                                      >  2:525311/1‑150 (MQ=255)                                                                                       aGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTa                                                      <  2:1356367/150‑1 (MQ=255)                                                                                        gAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTAc                                                     <  1:611528/150‑1 (MQ=255)                                                                                             ccacgtaccgtcggcagcgtccaacaagagctggccacggcccgctgataccttccGGGCGGCGGGGTGATGCCGCCCGGa                                                                                                                     <  2:1084957‑M1/25‑1 (MQ=255)                                                                                             ccacgtaccgtcggcagcgtccaacaagagctggccacggcccgctgataccttccGGGCGGCGGGGTGATGCCGCCCGGa                                                                                                                     >  1:1084957‑M1/57‑81 (MQ=255)                                                                                              ccTGCTGCGCCCGAGCGCGGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCggg                                                                                                                                    <  2:1141536/65‑1 (MQ=25)                                                                                              ccTGCTGCGCCCGAGCGCGGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCggg                                                                                                                                    >  1:1141536/1‑65 (MQ=25)                                                                                               cTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTg                                              <  1:779185/150‑1 (MQ=255)                                                                                                tGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGcc                                                                                                      <  1:627128/93‑1 (MQ=255)                                                                                                tGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGcc                                                                                                      >  2:627128/1‑93 (MQ=255)                                                                                                         cGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCt                                    <  2:891847/150‑1 (MQ=255)                                                                                                                     gCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTg                        <  2:430349/150‑1 (MQ=255)                                                                                                                     gCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTg                        >  1:137678/1‑150 (MQ=255)                                                                                                                          tCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCCGAAGGTCTCAGCGGCCCGGGGCCAGCTCTTGTTGGACGCGGCCGACGGTACGTGGCCAAGGGTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGc                   >  2:909741/1‑150 (MQ=255)                                                                                                                                 cTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGc                                                 <  1:659063/113‑1 (MQ=255)                                                                                                                                 cTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGc                                                 >  2:659063/1‑113 (MQ=255)                                                                                                                                      aTTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGCCGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGc       <  1:1164245/150‑1 (MQ=255)                                                                                                                                          gCTTAGCTACTGGGCGGCGGGGTGATTCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAgg                                                          >  2:1154526/1‑95 (MQ=255)                                                                                                                                          gCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAgg                                                          <  1:1154526/95‑1 (MQ=255)                                                                                                                                          gCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTAc                                                     >  1:183731/1‑100 (MQ=255)                                                                                                                                          gCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTAc                                                     <  2:183731/100‑1 (MQ=255)                                                                                                                                          gCTTAGCTACTGGGCGGCGGGGCGATGACGCCCGGCAGGTATCAGCGGGGCGTGTCCAGGGGCTGTTGGACGCGGCGGACGGTACTTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTcg   >  2:1231805/1‑150 (MQ=255)                                                                                                                                           cTTGGCTTCTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTTTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTcgc  <  1:595993/150‑1 (MQ=255)                                                                                                                                                    tGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTg                                              >  2:870710/1‑97 (MQ=255)                                                                                                                                                    tGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTg                                              <  1:870710/97‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                            CCATGCGCCGTGATAGCGGCTTGGCTCGAGTCTGAAGCGTTTCAGCCATGACTGCAACTAAGGGCTTGTGGCCGGCAGTCCGGGACAGAAAAGCCTGCCGCGCTCGGGCGCAGCAGGCTAGTCGAAAGCTAGAATTCGCTTAGCTACTGGGCGGCGGGGTGATGCCGCCCGGAAGGTATCAGCGGGCCGTGGCCAGCTCTTGTTGGACGCTGCCGACGGTACGTGGCCAAGGTTTACCAGCCTGGACCTTCGCTGGCAAGTTCTTGATTGCCGCAACCGCTGCGTCGC  >  NC_002947/5798151‑5798438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.