| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5947161 = | 50 (0.950) | 14 (0.290) | 13/226 | NT | 22.4% | intergenic (‑97/+109) | ubiD/rho | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho |
| ? | NC_002947 | 5947230 = | 51 (1.060) | intergenic (‑166/+40) | ubiD/rho | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho | |||||
CCAAGACCAACGATGAGTTCTTCCTGTCGATGAAGCGCAAGTAAGCGAGCGTTTCAGGCTGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5947313‑5947161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgaagggCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTG > NC_002947/5947230‑5947378 CCAAGACCAACGATGAGTTCTTCCTGTCGATGAAGCGCAAGTAAGCGAGCGTTTCAGGCTGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAA < 2:144030/150‑1 GCGAGCGTTTCAGGCTGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAG > 1:1090294/1‑107 GCGAGCGTTTCAGGCTGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAG < 2:1090294/107‑1 TGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGC < 1:763614/88‑1 TGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGC > 2:763614/1‑88 GCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCAT > 2:681545/1‑150 TGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTT > 1:646077/1‑150 CCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTC < 2:1405481/106‑1 CCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTC > 1:1405481/1‑106 TTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGG > 2:248615/1‑150 AAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGA < 2:646077/150‑1 GCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCCGAAACGCTCGCTTACTTGCGCTGCAGCTACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGT < 1:248615/150‑1 CTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCT > 1:369887/1‑139 CTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCT < 2:369887/139‑1 CTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCG > 1:1087213/1‑150 TCATTGCGGCCCTTGTAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAAC > 1:155868/1‑150 TTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGAT < 1:681545/150‑1 CTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGATGCAAAGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGT < 2:1175519/126‑1 CTTGTAGGAGCGGGCTT‑‑CCGCGAAGGGATGCAAAGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGT > 1:1175519/1‑126 CCGCGAAGGGCCGCAAGGCGGCCGCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGC > 1:404378/1‑150 CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGT > 1:612805/1‑95 CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGT < 2:612805/95‑1 CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAA > 1:1070898/1‑74 CCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAA < 2:1070898/74‑1 CGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGC < 2:1390976/150‑1 GAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAG < 1:634705/148‑1 GAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAG > 2:634705/1‑148 AGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGC > 1:164021/1‑150 GGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTT < 1:267369/150‑1 GCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTG < 2:1152149/150‑1 CCAAGACCAACGATGAGTTCTTCCTGTCGATGAAGCGCAAGTAAGCGAGCGTTTCAGGCTGGATTGATTGGGGCCGCCTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTGCACAGGTCATTGCGGCCCTTGTAGGAGCGGGCTT‑‑CCGCGAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5947313‑5947161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgaagggCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTG > NC_002947/5947230‑5947378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |