New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5965051	80 (1.520)	6 (0.120)	6/236	NT	6.7%	coding (189/696 nt)	had	(S)‑2‑haloacid dehalogenase
	?	NC_002947	= 5965075	90 (1.790)					coding (213/696 nt)	had	(S)‑2‑haloacid dehalogenase

ACCCTGTGGGACACCGCGCCGGTGATTGCCACCGCGGAAGTCGTGCTGCGCGACTGGCTCGAGGCCAACGCACCAACCCTCGGCAGCGTGCCGGTGGAACACCTGTTCGCCATCCGCGAGCGCCTGGTGCAAGCAGAGCCCGGCCTCAAGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5964899‑5965051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcacGCGCCTGCGCAGGGCGCTGATGCGGTGCTTGAGGCCG  <  NC_002947/5965075‑5965039                                                                                                                                                                                                ACCCTGTGGGACACCGCGCCGGTGATTGCCACCGCGGAAGTCGTGCTGCGCGACTGGCTCGAGGCCAACGCACCAACCCTCGGCAGCGTGCCGGTGGAACACCTGTTCGCCATCCGCGAGCGCCTGGTGCAAGCAGAGCCCGGCCTCAAG                                          <  1:797599/150‑1   CCTGTGGGACACCGCGCCGGTGATTGCCACCGCGGAAGTCGTGCTGCGCGACTGGCTCGAGGCCAACGCACCAACCCTCGGCAGCGTGCCGGTGGAACACCTGTTCGCCATCCGCGAGCGCCTGGTGCAAGCAGAGCCCGGCCTCAAGCA                                        >  2:1037446/1‑150                              CACCGCGGAAGTCGTGCTGCGCGACTGGCTCGAGGCCAACGCACCAACCCTCGGCAGCGTGCCGGTGGAACACCTGTTCGCCATCCGCGAGCGCCTGGTGCAAGCAGAGCCCGGCCTCAAGCACGCGCCTGCGCAGGGCGCTGATGCGGT             <  1:1037446/150‑1                                         TCGTGCTGCGCGACTGGCTCGAGGCCAACGCACCAACCCTCGGCAGCGTGCCGGTGGAACACCTGTTCGCCATCCGCGAGCGCCTGGTGCAAGCAGAGCCCGGCCTCAAGCACGCGCCTGCGCAGGGCGCTGATGCGGTGCTTGAGGCCG  <  1:420702/150‑1                                                                          CAACCCTCGGCAGCGTGCCGGTGGAACACCTGTTCGCCATCCGCGAGCGCCTGGTGCAAGCAGAGCCCGGCCTCAAGCACGCGCCTGCGCAGGGCGCTGATGCGG              <  1:915556/105‑1                                                                          CAACCCTCGGCAGCGTGCCGGTGGAACACCTGTTCGCCATCCGCGAGCGCCTGGTGCAAGCAGAGCCCGGCCTCAAGCACGCGCCTGCGCAGGGCGCTGATGCGG              >  2:915556/1‑105                                                                                                     ACCTGTTCGCCATCCGCGAGCGCCTGGTGCAAGCAGAGCCCGGCCTCAAGCACGCGCCTGCGCAGGGCGCTGATGCGGTGCTTGA       >  1:406979/1‑85                                                                                                     ACCTGTTCGCCATCCGCGAGCGCCTGGTGCAAGCAGAGCCCGGCCTCAAGCACGCGCCTGCGCAGGGCGCTGATGCGGTGCTTGA       <  2:406979/85‑1                                                                                                                                                                                                ACCCTGTGGGACACCGCGCCGGTGATTGCCACCGCGGAAGTCGTGCTGCGCGACTGGCTCGAGGCCAACGCACCAACCCTCGGCAGCGTGCCGGTGGAACACCTGTTCGCCATCCGCGAGCGCCTGGTGCAAGCAGAGCCCGGCCTCAAGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5964899‑5965051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcacGCGCCTGCGCAGGGCGCTGATGCGGTGCTTGAGGCCG  <  NC_002947/5965075‑5965039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.