| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5978514 = | 65 (1.240) | 3 (0.060) | 3/238 | NT | 4.7% | coding (659/993 nt) | PP_5241 | LuxR family transcriptional regulator |
| ? | NC_002947 | 5978543 = | 58 (1.140) | coding (630/993 nt) | PP_5241 | LuxR family transcriptional regulator | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGCCTGCTGCTGGACATGCACTTGCCTGGCACAAGTGGCCTGGAGGTACAGGATGCGCTGTGCCGGCTGGCGCTGCCCTGGCCGATCGTGTTCATGACTGGTTTCGGCACCATCCCGATGACCGTCCAGGCCATGCGCGCCGGGGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5978663‑5978514‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtCATCGGGATGGTGCCGAAACCAGTCATGAACACGATCGGCCAGGGCAGCGCCAGCCGGCACAGCGCATCCTGTACCTCCAGGCCACTTGTGCCAGGCAAGTGCATGTCCAGCAGCAGGCAGGCACAGGGGGTTTCCAGGCGGGCCTC > NC_002947/5978543‑5978689 CTGCCTGCTGCTGGACATGCACTTGCCTGGCACAAGTGGCCTGGAGGTACAGGATGCGCTGTGCCGGCTGGCGCTGCCCTGGCCGATCGTGTTCATGACTGGTTTCGGCACCATCCCGATGACCGTCCAGGCCATGCGCGCCGGGGCGGT < 2:1270246/150‑1CTGCCTGCTGCTGGACATGCACTTGCCTGGCACAAGTGGCCTGGAGGTACAGGATGCGCTGTGCCGGCTGGCGCTGCCCTGGCCGATCGTGTTCATGACTGGTTTCGGCACCATCCCGATGACCGTCCAGGCCATGCGCGCCGGGGCGGT < 2:1424923/150‑1 TCCCGATGACCGTCCAGGCCATGCGCGCCGGGGCGGTCATCGGGATGGTGCCGAAACCAGTCATGAACACGATCGGCCAGGGCAGCGCCAGCCGGCACAGCGCATCCTGTACCTCCAGGCCACTTGTGCCAGGCAAGTGCATGTCCAGCA > 1:1099964/1‑150 CGTCCAGGCCATGCGCGCCGGGGCGGTCATCGGGATGGTGCCGAAACCAGTCATGAA < 1:64686/57‑1 CGTCCAGGCCATGCGCGCCGGGGCGGTCATCGGGATGGTGCCGAAACCAGTCATGAA > 2:64686/1‑57 CGGTCATCGGGATGGTGCCGAAACCAGTCATGAACACGATCGGCCAGGGCAGCGCCAGCCGGCACAGCGCATCCTGTACCTCCAGGCCACTTGTGCCAGGCAAGTGCATGTCCAGCAGCAGGCAGGCACAGGGGGTTTCCAGGCGGGCCT < 2:478191/150‑1 GGTCATCGGGATGGTGCCGAAACCAGTCATGAACACGATCGGCCAGGGCAGCGCCAGCCGGCACAGCGCATCCTGTACCTCCAGGCCACTTGTGCCAGGCAAGTGCATGTCCAGCAGCAGGCAGGCACAGGGGGTTTCCAGGCGGGCCTC < 1:758414/150‑1 CTGCCTGCTGCTGGACATGCACTTGCCTGGCACAAGTGGCCTGGAGGTACAGGATGCGCTGTGCCGGCTGGCGCTGCCCTGGCCGATCGTGTTCATGACTGGTTTCGGCACCATCCCGATGACCGTCCAGGCCATGCGCGCCGGGGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5978663‑5978514‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtCATCGGGATGGTGCCGAAACCAGTCATGAACACGATCGGCCAGGGCAGCGCCAGCCGGCACAGCGCATCCTGTACCTCCAGGCCACTTGTGCCAGGCAAGTGCATGTCCAGCAGCAGGCAGGCACAGGGGGTTTCCAGGCGGGCCTC > NC_002947/5978543‑5978689 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |