| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6125135 | 42 (0.800) | 7 (0.140) | 7/236 | NT | 15.3% | intergenic (‑271/‑127) | PP_5373/PP_5374 | Rieske 2Fe‑2S family protein/choline/carnitine/betaine transporter family protein |
| ? | NC_002947 | = 6125155 | 37 (0.730) | intergenic (‑291/‑107) | PP_5373/PP_5374 | Rieske 2Fe‑2S family protein/choline/carnitine/betaine transporter family protein | |||||
TAGATAATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6125015‑6125135‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccAAGGCGAG‑GTACGCTC‑TCTCGGGCCCTATCAAAATGGGAGAATTACCCGCTCTTCGACAAACCATTTCTAGTCATTAATTGATTACCAAAAGTCATTAATCTGAAAATTCCAGAGCCTGGCAGTTCATCAACGATTATCTACCACTAC < NC_002947/6125155‑6125008 TAGATAATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCAAGGCGAG‑GTACGCTC‑TCTCGGGCCCTAT > 1:1237349/1‑150 AATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCAAGGCGAG‑GTACGCTC‑TCTCGGGCCCTATCAAAA < 2:1237349/150‑1 GTTGATGAACTGCCAGGCTTGGCTATTTTCAGATTAATGACTTTTGGTAATCAATTAATGCCTAGAAATGGTTTGTCGAAGTGCGGGTAATTCTCCCATTTTGATAGGGCCCAAGGCGAG‑GTACGCTC‑TCTCGGGCCCTATCAAAATGGG < 1:1141755/150‑1 GAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGG < 1:1262879/102‑1 GAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGG > 2:1262879/1‑102 TCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCAAGGCGAG‑GTACGCTC‑TCTCGGGCCCTATCAAAATG < 1:953995/120‑1 TCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCAAGGCGAG‑GTACGCTC‑TCTCGGGCCCTATCAAAATG > 2:953995/1‑120 TCCCATTTTGATAGGGCCCGA‑GAGAGCGTAC‑CTCGCCTTGGGCCCTATCAAAATGGGAGAATTACCCGCTCTTCGACAAACCATTTCTAGTCATTAATTGATTACCAAAAGTCATTAATCTGAAAATTCCAGAGCCTGGCAGTTCAT < 1:328425/147‑1 TCCCATTTTGATAGGGCCCGA‑GAGAGCGTAC‑CTCGCCTTGGGCCCTATCAAAATGGGAGAATTACCCGCTCTTCGACAAACCATTTCTAGTCATTAATTGATTACCAAAAGTCATTAATCTGAAAATTCCAGAGCCTGGCAGTTCAT > 2:328425/1‑147 CCAAGGCGAG‑GTACGCTC‑TCTCGGGCCCTATCAAAATGGGAGAATTACCCGCTCTTCGACAAACCATTTCTAGTCATTAATTGATTACCAAAAGTCATTAATCTGAAAATTCCAGAGCCTGGCAGTTCATCAACGATTATCTACCACTAC > 1:631684/1‑150 CCAAGGCGAG‑GTACGCTC‑TCTCGGGCCCTATCAAAATGGGAGAATTACCCGCTCTTCGACAAACCATTTCTAGTCATTAATTGAT > 1:335214/1‑85 CCAAGGCGAG‑GTACGCTC‑TCTCGGGCCCTATCAAAATGGGAGAATTACCCGCTCTTCGACAAACCATTTCTAGTCATTAATTGAT < 2:335214/85‑1 CCAAGGCGAG‑GTACGCTC‑TCTCGGGCCCTATCAAAATGGGAGAATTACCCGCTCTTCGACAAACCATTTCTAGT > 1:291953/1‑74 CCAAGGCGAG‑GTACGCTC‑TCTCGGGCCCTATCAAAATGGGAGAATTACCCGCTCTTCGACAAACCATTTCTAGT < 2:291953/74‑1 TAGATAATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6125015‑6125135‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccAAGGCGAG‑GTACGCTC‑TCTCGGGCCCTATCAAAATGGGAGAATTACCCGCTCTTCGACAAACCATTTCTAGTCATTAATTGATTACCAAAAGTCATTAATCTGAAAATTCCAGAGCCTGGCAGTTCATCAACGATTATCTACCACTAC < NC_002947/6125155‑6125008 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |