| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6125135 | 42 (0.800) | 7 (0.140) | 7/236 | NT | 15.3% | intergenic (‑271/‑127) | PP_5373/PP_5374 | Rieske 2Fe‑2S family protein/choline/carnitine/betaine transporter family protein |
| ? | NC_002947 | = 6125155 | 37 (0.730) | intergenic (‑291/‑107) | PP_5373/PP_5374 | Rieske 2Fe‑2S family protein/choline/carnitine/betaine transporter family protein | |||||
GTCGATGACGGTAGTGGTAGATAATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAACCCTTGAACAAAAACAATAGGGGATAACCAATGCGTGCCGAATCTGGCCT > NC_002947/6124998‑6125281 | gtcgATGACGGTAGTGGTAGATAATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAc < 1:580321/150‑1 (MQ=255)gtcgATGACGGTAGTGGTAGATAATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAc > 1:503796/1‑150 (MQ=255) tcgATGACGGTAGTGGTAGATAATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAc‑c > 1:244402/1‑150 (MQ=255) gATGACGGTAGTGGTAGATAATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTc < 2:244402/150‑1 (MQ=255) gTAGTGGTAGATAATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTgg > 1:631684‑M2/1‑148 (MQ=255) tGGTAGATAATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCt > 1:1091884/1‑150 (MQ=255) tAGATAATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCaaggcgaggtacgctctctcgggccctat > 1:1237349‑M1/1‑121 (MQ=255) tAGATAATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCg < 2:1218204/150‑1 (MQ=255) tAATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGaa < 2:1091884/150‑1 (MQ=255) tAATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGaa < 1:476612/150‑1 (MQ=255) tAATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCACGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGaa > 2:740447/1‑150 (MQ=255) aaTCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCaaggcgaggtacgctctctcgggccctatcaaaa < 2:1237349‑M1/150‑35 (MQ=255) aTCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCga < 2:282998/117‑1 (MQ=255) aTCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCga > 1:282998/1‑117 (MQ=255) gTTGATGAACTGCCAGGCTTGGCTATTTTCAGATTAATGACTTTTGGTAATCAATTAATGCCTAGAAATGGTTTGTCGAAGTGCGGGTAATTCTCCCATTTTGATAGGGCCCaaggcgaggtacgctctctcgggccctatcaaaatggg < 1:1141755‑M1/150‑39 (MQ=255) atgaACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCAAGGCGAG‑GTACGCTCTC‑TCgggccctatcaaaatggga < 1:328425‑M2/147‑20 (MQ=255) atgaACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCAAGGCGAG‑GTACGCTCTC‑TCgggccctatcaaaatggga > 2:328425‑M2/1‑128 (MQ=255) aTTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCAcctgcct < 1:216956/150‑1 (MQ=255) ttCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCACGAGA‑GAGCGTAC‑CTCGNCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCtgtg < 1:740447/150‑1 (MQ=255) tCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCaaggcgaggtacgctctctcgggccctatcaaaatg < 1:953995‑M1/120‑37 (MQ=255) tCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCaaggcgaggtacgctctctcgggccctatcaaaatg > 2:953995‑M1/1‑84 (MQ=255) aCTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTa > 1:406709/1‑150 (MQ=255) ttttGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCa < 2:521231/115‑1 (MQ=255) ttttGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCa > 1:521231/1‑115 (MQ=255) gTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAAc > 1:1226648/1‑150 (MQ=255) aaTCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGctc > 2:741614/1‑139 (MQ=255) aaTCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGctc < 1:741614/139‑1 (MQ=255) aTCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTgg > 1:335214‑M2/1‑83 (MQ=255) aTCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTgg < 2:335214‑M2/85‑3 (MQ=255) aTCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGc > 2:363630/1‑91 (MQ=255) aTCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGc < 1:363630/91‑1 (MQ=255) aaTTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGAc > 2:554860/1‑150 (MQ=255) ttAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAAc > 2:17594/1‑142 (MQ=255) ttAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAAc < 1:17594/142‑1 (MQ=255) aCTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTgg > 1:291953‑M2/1‑72 (MQ=255) aCTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTgg < 2:291953‑M2/74‑3 (MQ=255) cTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGc < 2:671740/68‑1 (MQ=255) cTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGc > 1:671740/1‑68 (MQ=255) cTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAAccc > 1:476425/1‑150 (MQ=255) aGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAACCCtt < 1:298326/150‑1 (MQ=255) gTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAACCCTTGAACaaa > 1:912132/1‑150 (MQ=255) ttGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAACCCTTGAACaaaaa < 1:554860/150‑1 (MQ=255) aaGAGCGGGTAATTCTCCAATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAACCCTTGAACAAAAACAATAg > 2:205364/1‑150 (MQ=255) agagCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAACCCTTGAACAAAAACAATAgg < 2:503796/150‑1 (MQ=255) agCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAACCCTTGAACAAAAACAATAgggg > 1:220121/1‑150 (MQ=255) gTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAACCCTTGAACAAAAACAATAGGGGATAAc > 1:1399197/1‑150 (MQ=255) tctcCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGAc > 2:123495/1‑111 (MQ=255) tctcCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGAc < 1:123495/111‑1 (MQ=255) tcCCATTTTGATAGGGCCCgagagagcgtacctcgccttgggccctatcaaaatgggagaattacccgctcttcgacaaaccatttctagtcattaattgattaccaaaagtcattaatctgaaaattccagagcctggcagttcat < 1:328425‑M1/147‑129 (MQ=255) tcCCATTTTGATAGGGCCCgagagagcgtacctcgccttgggccctatcaaaatgggagaattacccgctcttcgacaaaccatttctagtcattaattgattaccaaaagtcattaatctgaaaattccagagcctggcagttcat > 2:328425‑M1/1‑19 (MQ=255) tcCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAAccc < 1:670785/118‑1 (MQ=255) tcCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAAccc > 2:670785/1‑118 (MQ=255) cccATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTgggccctatcaaaatgggagaattacccgcacttcgacaaaccatttctaggcattaattgattaccaaaagtcattaatctgaaaatagccaagcctggcagttcatcaac < 1:1141755‑M2/150‑113 (MQ=255) ccATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAACCCTTGAACAAAAACAATAGGGGATAACCAATGCGTg > 2:986244/1‑150 (MQ=255) cATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTgggccctatcaaaatgggagaattacccgctcttcgacaaaccatttctagtcattaattgattaccaaaagtcattaatctga > 2:953995‑M2/1‑36 (MQ=255) cATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTgggccctatcaaaatgggagaattacccgctcttcgacaaaccatttctagtcattaattgattaccaaaagtcattaatctga < 1:953995‑M2/120‑85 (MQ=255) ttttGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTgggccctatcaaaatgggagaattacccgctcttcgacaaaccatttctagtcattaattgattaccaaaagtcattaatctgaaaattccagagcctggcagttcatcaacgatt < 2:1237349‑M2/150‑117 (MQ=255) ttttGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAACCCTTGAACAAAAACAATAGGGGATAACCAATGCGTGCCg > 1:201866/1‑150 (MQ=255) tGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAAcc > 1:211829/1‑109 (MQ=255) tGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAAcc < 2:211829/109‑1 (MQ=255) aTAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTgggccctatcaaaatgggagaattacccgctcttcgacaaaccatttctagtcattaattgattaccaaaagtcattaatctgaaaattccagagcctggcagttcatcaacgattatcta > 1:1237349‑M2/1‑29 (MQ=255) aTAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAACCCTTGAACAAAAACAATAGGGGa < 2:476706/129‑1 (MQ=255) aTAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAACCCTTGAACAAAAACAATAGGGGa > 1:476706/1‑129 (MQ=255) ccaaggcgaggtacgctctctcgggccctatcaaaatgggagaattacccgctcttcgacaaaccatttctagtcattaattgattaccaaaagtcattaatctgaaaattccagagcctggcagttcatcaacgattatctaccactac > 1:631684‑M1/1‑2 (MQ=255) ccaaggcgaggtacgctctctcgggccctatcaaaatgggagaattacccgctcttcgacaaaccatttctagtcattaattgat < 2:335214‑M1/85‑84 (MQ=255) ccaaggcgaggtacgctctctcgggccctatcaaaatgggagaattacccgctcttcgacaaaccatttctagtcattaattgat > 1:335214‑M1/1‑2 (MQ=255) ccaaggcgaggtacgctctctcgggccctatcaaaatgggagaattacccgctcttcgacaaaccatttctagt > 1:291953‑M1/1‑2 (MQ=255) ccaaggcgaggtacgctctctcgggccctatcaaaatgggagaattacccgctcttcgacaaaccatttctagt < 2:291953‑M1/74‑73 (MQ=255) | GTCGATGACGGTAGTGGTAGATAATCGTTGATGAACTGCCAGGCTCTGGAATTTTCAGATTAATGACTTTTGGTAATCAATTAATGACTAGAAATGGTTTGTCGAAGAGCGGGTAATTCTCCCATTTTGATAGGGCCCGAGA‑GAGCGTAC‑CTCGCCTTGGGCCTGCGGGAAGACCGCCGCCAGGGATCCGGCACCTGCCTGTGGCAGCGGCTCTACCCAAACCGTGACATCAAACCCTTGAACAAAAACAATAGGGGATAACCAATGCGTGCCGAATCTGGCCT > NC_002947/6124998‑6125281 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |