New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1425 =	49 (0.930)	3 (0.060)	3/232	NT	6.0%	coding (396/792 nt)	parA	chromosome partition protein
	?	NC_002947	1453 =	48 (0.970)					coding (368/792 nt)	parA	chromosome partition protein

AGGCCCTCGATCTTCAACTCCGGGTTCAACCGGGCGGCGATACGCTTGATGTTATCCACAAGGTCGCTGAGACCTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAGCGGCGGTCAGGTCACGGTTGGCCGGCA  >  NC_002947/1279‑1567                                                                                                                                                   |                                                                                                                                                 cactactccgagcacggaggcttccagttgctgccggccaaccgtgacctgaccgccgctgaggtggtgctgctggaaatgcaggtcaaggaaagccgtctgcgcaacgccctggcgcctattcgcgataactacgactacatcctCATc                                                                                                                                               >  2:1111331‑M1/147‑150 (MQ=255)  actactccgagcacggaggcttccagttgctgccggccaaccgtgacctggccgccgctgaggtggtgctgctggaaatgcaggtcaaggaaagccgtctgcgcaacgccctggcgcctattcgcgataactacgactacatcctCATCg                                                                                                                                              <  1:509939‑M1/5‑1 (MQ=255)    tactccgagcacggaggcttccagttgctgccggccaaccgtgacctgaccgccgctgaggtggtgctgctggaaatgcaggtcaaggaaagccgtctgcgcaacgccctggcgcctattcgcgataactactactacatcctCATCGAc                                                                                                                                            <  2:176220‑M1/7‑1 (MQ=255)       tCGATCTTCAACTCCGGGTTCAACCGGGCGGCGATACGCTTGATGTTATCCACAAGGTCGCTGAGACCTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGc                                                                                                                                         >  2:151034/1‑150 (MQ=255)                  cgttgggTTCATCCGGGCGGCGATACGCGTGCTTTTATCCACAAGGTCGCTGAGACCTTCCAGTGCGGAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCa                                                                                                                            >  2:133645/5‑150 (MQ=255)                    ccGGGTTCAACCGGGCGGCGATACGCTTGATGTTATCCACAAGGTCGCTGAGACCTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGt                                                                                                                          <  2:767301/150‑1 (MQ=255)                     cGGGTTCAACCGGGCGGCGATACGCTTGATGTTATCCACAAGGTCGCTGAGACCTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTc                                                                                                                         <  1:984463/150‑1 (MQ=255)                               cGGGCGGCGATACGCTTGATGTTATCCACAAGGTCGCTGAGACCTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATg                                                                                                               >  1:756118/1‑150 (MQ=255)                                  gcggcgATACGCTTGATGTTATCCACAAGGTCGCTGAGACCTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAg                                                                                                            <  1:450440/150‑1 (MQ=255)                                       gATACGCTTGATGTTATCCACAAGGTCGCTGAGACCTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTa                                                                                                       >  1:251250/1‑150 (MQ=255)                                         tACGCTTGATGTTATCCACAAGGTCGCTGAGACCTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGt                                                                                                     >  2:1243257/1‑150 (MQ=255)                                            gCTTGATGTTATCCACAAGGTCGCTGAGACCTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTAt                                                                                                  >  2:477124/1‑150 (MQ=255)                                                       tCCACAAGGTCGCTGAGACCTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACAAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑TCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGgc                                                                                       <  2:444253/150‑1 (MQ=255)                                                           caAGGTCGCTGAGACCTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCa                                                                                   >  2:224536/1‑150 (MQ=255)                                                                    tGAGACCTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATc                                                                                                 <  2:1317948/127‑1 (MQ=255)                                                                    tGAGACCTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATc                                                                                                 >  1:1317948/1‑127 (MQ=255)                                                                         ccTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGa                                                                     <  2:756118/150‑1 (MQ=255)                                                                          cTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAgg                                                                                                                  <  2:673077/104‑1 (MQ=255)                                                                          cTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCAACGACAGCGACGGCG‑G‑GCAGTCGATGAgg                                                                                                                  >  1:673077/1‑104 (MQ=255)                                                                           ttCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGtt                                                                                                    <  2:1082072/117‑1 (MQ=255)                                                                           ttCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGtt                                                                                                    >  1:1082072/1‑117 (MQ=255)                                                                               atgcaggtcaaggaaagccgtctgcgcaacgccctggcgcctattcgcgataactacgactacatcctCATc                                                                                                                                               <  2:108615‑M1/4‑1 (MQ=255)                                                                               atgcaggtcaaggaaagccgtctgcgcaacgccctggcgcctattcgcgataactacgactacatcctCATc                                                                                                                                               >  1:108615‑M1/69‑72 (MQ=255)                                                                                  gCGGAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTcc                                                            <  1:133645/150‑1 (MQ=255)                                                                                         aCTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCt                                                     <  1:224536/150‑1 (MQ=255)                                                                                           tCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATcg                                                                                                >  2:1308790/1‑105 (MQ=255)                                                                                           tCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATcg                                                                                                <  1:1308790/105‑1 (MQ=255)                                                                                           tCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGc                                                   >  1:1004760/1‑150 (MQ=255)                                                                                             acacTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCAt                                                 >  2:509939/1‑150 (MQ=255)                                                                                             acacTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCAt                                                 >  2:934869/1‑150 (MQ=255)                                                                                              cacTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCAtt                                                <  1:1035150/150‑1 (MQ=255)                                                                                                     tGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATGGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGGATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCGTTTCcagga                                         >  2:228945/1‑148 (MQ=255)                                                                                                       gggATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCagcagc                                       <  2:502247/150‑1 (MQ=255)                                                                                                         gATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGcac                                     <  1:934869/150‑1 (MQ=255)                                                                                                           tAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGcacca                                   >  1:483000/1‑150 (MQ=255)                                                                                                              tCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCt                                >  1:186336/1‑150 (MQ=255)                                                                                                                   gcgcctattcgcgataactacgactacatcctCATCGACTGCC‑CGCCG‑TCGCTGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAgcg                           <  1:1070508‑M1/118‑1 (MQ=255)                                                                                                                   ccATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAgcg                           <  2:251250/150‑1 (MQ=255)                                                                                                                    cATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTcc                                             <  1:696988/131‑1 (MQ=255)                                                                                                                    cATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTcc                                             >  2:696988/1‑131 (MQ=255)                                                                                                                    cATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAgcgg                          <  2:1004760/150‑1 (MQ=255)                                                                                                                    cATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAgcgg                          >  1:941440/1‑150 (MQ=255)                                                                                                                     aTCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGcac                                     <  1:1010055/138‑1 (MQ=255)                                                                                                                     aTCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGcac                                     >  2:1010055/1‑138 (MQ=255)                                                                                                                     aTCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAgcggc                         >  2:331525/1‑150 (MQ=255)                                                                                                                         gAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAGCGGCggtc                     >  1:454146/1‑150 (MQ=255)                                                                                                                           tcgcgataactacgactacatcctCATCGACTGCC‑CGCCGTC‑GCTGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAGCGGCggtcag                   >  2:1070508‑M1/25‑150 (MQ=255)                                                                                                                               aCCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAGCGGCggtcaggtca               >  1:176220/1‑150 (MQ=255)                                                                                                                                 cAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGGCGTACAGCCATTACCTGCATTTCCAGCAGCACCACCTCAGCGGCGGTCAGGTCACg             >  2:749363/1‑150 (MQ=255)                                                                                                                                     tacgactacatcctCATCGACTGCC‑CGCCG‑TCGCTGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAGCGGCGGTCAGGTCACGGTTg         <  2:278726‑M1/136‑1 (MQ=255)                                                                                                                                     gCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAGCGGCGGTCAGGTCACGGTTg         <  1:477124/150‑1 (MQ=255)                                                                                                                                       aTTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCa                                                  >  2:398732/1‑107 (MQ=255)                                                                                                                                       aTTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCa                                                  <  1:398732/107‑1 (MQ=255)                                                                                                                                         tCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAGCGGCGGTCAGGTCACGGtt          <  1:55448/145‑1 (MQ=255)                                                                                                                                         tCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAGCGGCGGTCAGGTCACGGtt          >  2:55448/1‑145 (MQ=255)                                                                                                                                         tCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAGAGGCGGTATGGTCGAGGTTGGcca     >  2:1371316/1‑149 (MQ=255)                                                                                                                                            gCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGAGTTGCGCAGACGGCTTTCCGTGACCGCCATTTCCAGCAGCACCACCTCAGCGGCGGTCAGGTCACGGTTGGCCGgca  <  1:1243257/150‑1 (MQ=255)                                                                                                                                              gTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAGCGGCggtcag                   <  1:935418/131‑1 (MQ=255)                                                                                                                                              gTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAGCGGCggtcag                   >  2:935418/1‑131 (MQ=255)                                                                                                                                                   |                                                                                                                                                 AGGCCCTCGATCTTCAACTCCGGGTTCAACCGGGCGGCGATACGCTTGATGTTATCCACAAGGTCGCTGAGACCTTCCAGTGCGTAGTACTCACACTGCATGGGGATAATCACGCCATCGGAAGCGACCAGAGCATTCAGCGTGAGCATCGACAGCGACGGCG‑G‑GCAGTCGATGAGGATGTAGTCGTAGTTATCGCGAATAGGCGCCAGGGCGTTGCGCAGACGGCTTTCCTTGACCTGCATTTCCAGCAGCACCACCTCAGCGGCGGTCAGGTCACGGTTGGCCGGCA  >  NC_002947/1279‑1567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.