| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 15123 | 36 (0.680) | 6 (0.120) | 4/232 | NT | 14.5% | coding (1794/2421 nt) | gyrB | DNA gyrase subunit B |
| ? | NC_002947 | = 15128 | 37 (0.750) | coding (1799/2421 nt) | gyrB | DNA gyrase subunit B | |||||
CGATGAGGCCATGGAAGAGTACATGACCCAGTCGGCTCTGGAAGATGCCAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAGGCCTGGCTGGCCCAGTTCCAGGCGCGTCTGAACTCCAGCCAGAAGTCTGGCCTGGC > NC_002947/14979‑15272 | cGATGAGGCCATGGGAGAGTACATGACCCAGTCGGCTCTGGAAGATGCCAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTATCAAGCGGCTGTc > 1:557872/1‑150 (MQ=255) gATGAGGCCATGGAAGAGTACATGACCCAGTCGGCTCTGGAAGATGCCAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCg > 1:180903‑M2/1‑149 (MQ=255) aTGAGGCCATGGAAGAGTACATGACCCAGTCGGCTCTGGAAGATGCCAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCgc < 2:512167‑M2/150‑3 (MQ=255) gAGGCCATGGAAGAGTACATGACCCAGTCGGCTCTGGAAGATGCCAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCgcgc > 1:1293384‑M2/1‑146 (MQ=255) gAGGCCATGGAAGAGTACATGACCCAGTCGGCTCTGGAAGATGCCAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCgcgc > 1:289699‑M2/1‑146 (MQ=255) ggCCATGGAAGAGTACATGACCCAGTCCGCTCTGGAAGATGCCAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCgacaggcgctt < 1:870726‑M1/150‑12 (MQ=255) aTGGAAGAGTACATGACCCAGTCGGCTCTGGAAGATGCCAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCgacaggcgcttgaga < 1:1118487‑M1/150‑16 (MQ=255) aTGGAAGAGTACATGACCCAGTCGGCTCTGGAAGATGCCAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTAc > 1:1283370/1‑150 (MQ=255) gagTACATGACCCAGTCGGCTCTGGAAGATGCCAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGaa < 2:1339910/150‑1 (MQ=255) tACATGACCCAGTCGGCTCTGGAAGATGCCAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCTGAagag > 2:363721/1‑150 (MQ=255) aCATGACCCAGTCGGCTCTGGAAGATGCCAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGc < 1:745936/150‑1 (MQ=255) aTGACCCAGTCGGCTCTGGAAGATGCCAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTg > 1:242742/1‑150 (MQ=255) ccAGTCGGCTCTGGAAGATGCCAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGa > 2:895870/1‑150 (MQ=255) aagccGGCGCTGGAAGATGCCAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTCGTGTCATGACGCCTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGat < 2:557872/146‑2 (MQ=255) cAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTa < 2:256833/141‑1 (MQ=255) cAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTa > 1:256833/1‑141 (MQ=255) aGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAg < 2:1270999/150‑1 (MQ=255) aGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAg < 1:512167/150‑1 (MQ=255) cTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTg < 2:1283370/150‑1 (MQ=255) tGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTgg < 2:897776/150‑1 (MQ=255) aTCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCTGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGtt < 1:363721/150‑1 (MQ=255) gcCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGa < 2:242742/150‑1 (MQ=255) agcagTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCa > 2:669019/1‑150 (MQ=255) gTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCa < 1:669019/150‑1 (MQ=255) ggCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCgacaggcgcttgaga < 2:751460‑M1/75‑16 (MQ=255) ggCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCgacaggcgcttgaga > 1:751460‑M1/1‑60 (MQ=255) aaGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAGGCctggctgg < 1:534955/150‑1 (MQ=255) cgcTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTAcct < 2:570983/91‑1 (MQ=255) cgcTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTAcct > 1:570983/1‑91 (MQ=255) tGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAGGCCTGGCTGGCCCAGt > 1:1062427/1‑150 (MQ=255) gTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCgacaggcgcttgaga < 1:1022927‑M1/54‑16 (MQ=255) gTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCgacaggcgcttgaga > 2:1022927‑M1/1‑39 (MQ=255) gTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGtt > 2:1256835/1‑110 (MQ=255) gTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGtt < 1:1256835/110‑1 (MQ=255) tGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAGGCCTGGCTGGCCCAGTTCCAGgc < 1:1317802/150‑1 (MQ=255) tCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAGGc < 1:1336295/124‑1 (MQ=255) tCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAGGc > 2:1336295/1‑124 (MQ=255) aTGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAGGCCTGGCTGGCCCAGTTCCAGGCGCGTCTGAACTccagc > 1:1158328/1‑150 (MQ=255) aTGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAGGCCTGGCTGGCCCAGTTCCAGGCGCGTCTGAACTccagc > 2:1212266/1‑150 (MQ=255) tGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAGGCCTGGCTGGCCCAGTTCCAGGCGCGTCTGAACTccagcc > 1:1194943/1‑150 (MQ=255) aaGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTgg > 1:391188/1‑88 (MQ=255) aaGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTgg < 2:391188/88‑1 (MQ=255) gACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAGGCCTGGCTGGCCCAGTTCCAGGCGCGTCTGAACTCCAGCCAGaa > 1:366646/1‑150 (MQ=255) tctcAAGCGCCTGTCgcgcttgagagtcttcatgacactacggaactcattcaccagcgcttccagctgcacgccggaaactgctggcgccgattcgtccaggtgcaggctggcatcttccagagccgactgggtcatgtactcttccat < 1:1118487‑M2/150‑136 (MQ=255) tctcAAGCGCCTGTCgcgcttgagagtcttcatgacactacggaactcattcaccagcgcttccagctgcacgcc > 1:751460‑M2/1‑15 (MQ=255) tctcAAGCGCCTGTCgcgcttgagagtcttcatgacactacggaactcattcaccagcgcttccagctgcacgcc < 2:751460‑M2/75‑61 (MQ=255) tctcAAGCGCCTGTCgcgcttgagagtcttcatgacactacggaactcattcac > 2:1022927‑M2/1‑15 (MQ=255) tctcAAGCGCCTGTCgcgcttgagagtcttcatgacactacggaactcattcac < 1:1022927‑M2/54‑40 (MQ=255) tcAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTgg < 2:251627/81‑1 (MQ=255) tcAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTgg > 1:251627/1‑81 (MQ=255) tcAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCa > 1:725005/1‑100 (MQ=255) tcAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCa < 2:725005/100‑1 (MQ=255) aaGCGCCTGTCgcgcttgagagtcttcatgacactacggaactcattcaccagcgcttccagctgcacgccggaaactgctggcgccgattcgtccaggtgcaggctggcatcttccagagcggactgggtcatgtactcttccatggcc < 1:870726‑M2/150‑140 (MQ=255) gcgcgacaggcgcttgagagtcttcatgacactacggaactcattcaccagcgcttccagctgcacgccggaaactgctggcgccgattcgtccaggtgcaggctggcatcttccagagccgactgggtcatgtactcttccatggcctc > 1:1293384‑M1/1‑4 (MQ=255) gcgcgacaggcgcttgagagtcttcatgacactacggaactcattcaccagcgcttccagctgcacgccggaaactgctggcgccgattcgtccaggtgcaggctggcatcttccagagccgactgggtcatgtactcttccatggcctc > 1:289699‑M1/1‑4 (MQ=255) gcgcCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAGGCCTGGCTGGCCCAGTTCCAGGCGCGTCTGAACTCCAGCCAGAAGTctggcct > 1:923347/1‑150 (MQ=255) gcgacaggcgcttgagagtcttcatgacactacggaactcattcaccagcgcttccagctgcacgccggaaactgctggcgccgattcgtccaggtgcaggctggcatcttccagagccgactgggtcatgtactcttccatggcctcat < 2:512167‑M1/150‑149 (MQ=255) cgacaggcgcttgagagtcttcatgacactacggaactcattcaccagcgcttccagctgcacgccggaaactgctggcgccgattcgtccaggtgcaggctggcatcttccagagccgactgggtcatgtactcttccatggcctcatc > 1:180903‑M1/1‑1 (MQ=255) ccTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAGGCCTGGCTGGCCCAGTTCCAGGCGCGTCTGAACTCCAGCCAGACGTctcgccgagc > 2:1169893/1‑146 (MQ=255) | CGATGAGGCCATGGAAGAGTACATGACCCAGTCGGCTCTGGAAGATGCCAGCCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCGCGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAGGCCTGGCTGGCCCAGTTCCAGGCGCGTCTGAACTCCAGCCAGAAGTCTGGCCTGGC > NC_002947/14979‑15272 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |