| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 447140 = | 53 (1.010) | 6 (0.150) +TTACGTCTTCAGGTTCAGCGTGGTCCCT |
4/190 | NT | 11.7% | intergenic (+17/‑285) | PP_0368/PP_0369 | acyl‑CoA dehydrogenase/diguanylate cyclase |
| ? | NC_002947 | = 3252686 | 64 (1.220) | intergenic (+173/+70) | ureG/PP_2851 | urease accessory protein/hypothetical protein | |||||
GCCAAGCTGCAGACTGCGCGCTTCTACTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCG > NC_002947/446992‑447289 | gCCAAGCTGCAGACTGCGCGCTTCTACTTCCAGCGCATCCTGCCACCTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCaa < 1:1149522/150‑1 (MQ=255) cTGCAGACTGCGCGCTTCTACTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCg > 1:1180923/1‑150 (MQ=255) aCTGCGCGCTTCTACTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGcc < 1:339383/150‑1 (MQ=255) tGCGCGCTTCTACTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCt > 2:1159975/1‑150 (MQ=255) cgcgcTTCTACTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGa < 1:1159975/150‑1 (MQ=255) cTTCTACTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCCGTACCCAAAACCCGCCTGCCCTGACCgg > 2:991910/1‑150 (MQ=255) cTACTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAg < 1:1152217/150‑1 (MQ=255) cATCCTGCCACGTGCGCGTACCCAGGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTa < 2:1105619/150‑1 (MQ=255) aTCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTAc > 1:1173199/1‑150 (MQ=255) tGCCACGTACCCGTACCAATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCt > 1:1183156/1‑150 (MQ=255) cACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCa < 2:1180923/150‑1 (MQ=255) cgtacccgtaccCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCCGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAgg < 1:991910/150‑1 (MQ=255) tacccgtacccATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGtt > 1:468185/1‑150 (MQ=255) gtacccATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCg > 2:629163/1‑150 (MQ=255) gtacccATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCg > 2:718389/1‑150 (MQ=255) aTGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTcc > 2:18717/1‑150 (MQ=255) aTGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTcc > 2:65341/1‑150 (MQ=255) aTGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTc < 2:984245/149‑1 (MQ=255) aTGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTc > 1:984245/1‑149 (MQ=255) tgGCGACCAGGCGGGCTGGCGCCAACAACCTTATGGCAATTTACGAAGAGCACTTCGGCCTGGCGTACTGATACTGGCGCGGTACCCAAAACCCGCCTGCCCTGGCCGGTAGGCGGGTGTTTTACGTCTTCAGGTTCAGCGTGGTCCCTc < 2:424873/150‑1 (MQ=255) gCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGc < 2:1084918/94‑1 (MQ=255) gCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGc > 1:1084918/1‑94 (MQ=255) gCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGt > 2:164468/1‑150 (MQ=255) gACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAg < 1:629163/150‑1 (MQ=255) cATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGc < 1:675015/133‑1 (MQ=255) cATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGc > 2:675015/1‑133 (MQ=255) aTGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGc > 1:427556/1‑150 (MQ=255) tGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCggg > 2:917674/1‑125 (MQ=255) tGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAgg < 1:917674/125‑1 (MQ=255) tGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCg > 1:630076/1‑150 (MQ=255) gCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTATCTGTACTATCCGCCTCCCCTGGCCGTGAGGTGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCgg < 1:1243081/150‑1 (MQ=255) cTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCggg < 1:773988/150‑1 (MQ=255) gTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGtt < 1:389013/150‑1 (MQ=255) tCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGtt < 1:364663/105‑1 (MQ=255) tCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGtt > 2:364663/1‑105 (MQ=255) cagcagggccggcctcttcgcgggtaaacccgctcctacgagggaccacgctgaacctgaagacgtaaAAAACCCGCCTGCCCTGACCGGGAGGCGGGt < 1:1303872‑M1/31‑1 (MQ=255) cagcagggccggcctcttcgcgggtaaacccgctcctacgagggaccacgctgaacctgaagacgtaaAAAACCCGCCTGCCCTGACCGGGAGGCGGGt > 2:1303872‑M1/69‑99 (MQ=255) aacaacCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTgg < 1:361677/121‑1 (MQ=255) aacaacCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTgg > 2:361677/1‑121 (MQ=255) caacCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAaga < 1:116669/150‑1 (MQ=255) tGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAggccg > 2:1216745/1‑150 (MQ=255) ctcttcgcgggtaaacccgctcctacgagggaccacgctgaacctgaagacgtaaAAAACCCGCCTGCCCTGACCGGGa < 2:389593‑M1/24‑1 (MQ=255) ctcttcgcgggtaaacccgctcctacgagggaccacgctgaacctgaagacgtaaAAAACCCGCCTGCCCTGACCGGGa > 1:389593‑M1/56‑79 (MQ=255) gggtaaacccgctcctacgagggaccacgctgaacctgaagacgtaaAAAAccc > 1:899730‑M1/48‑54 (MQ=255) gggtaaacccgctcctacgagggaccacgctgaacctgaagacgtaaAAAAccc < 2:899730‑M1/7‑1 (MQ=255) gACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGt < 2:128937/121‑1 (MQ=255) gACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGt > 1:128937/1‑121 (MQ=255) ttCGGCCTGTCGTACTGATACTGGCGCTGTACCAAAAACCCGCCTGCCCTGACCGGAAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCa > 1:304494/1‑150 (MQ=255) cGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGc < 2:939732/150‑1 (MQ=255) tGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTa > 2:867613/1‑105 (MQ=255) tGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTa < 1:867613/105‑1 (MQ=255) gTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACTTCTTCAGGTTCAGCGTGGTCCTTCGTAGGCACAGCTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCAATCAGCCGTTCACCg > 1:15167/1‑150 (MQ=38) gTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCg > 1:1288835/1‑150 (MQ=255) aCTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGtt < 2:630076/150‑1 (MQ=255) tGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCgg > 1:1395821/1‑92 (MQ=255) tGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCgg < 2:1395821/92‑1 (MQ=255) tGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGc > 1:675246/1‑150 (MQ=255) aCTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGTCTGTCCGCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAgc < 2:1183156/150‑1 (MQ=38) tGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAgcgc > 1:1068224/1‑150 (MQ=255) gcgcTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTa > 2:1289205/1‑150 (MQ=255) gtaaAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTgg > 2:651546‑M1/5‑107 (MQ=255) gtaaAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTgg < 1:651546‑M1/103‑1 (MQ=255) ccAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGc > 2:614940/1‑55 (MQ=255) ccAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGc < 1:614940/55‑1 (MQ=255) cAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTcgc < 2:4824/150‑1 (MQ=255) cAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTcgc < 2:1288835/150‑1 (MQ=255) aaaaCCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTcgcg > 1:298289/1‑150 (MQ=255) | GCCAAGCTGCAGACTGCGCGCTTCTACTTCCAGCGCATCCTGCCACGTACCCGTACCCATGTGGCGACCATGCTGTCGGGCGCCAACAACCTGATGGCGATGGACGAAGAGCACTTCGGCCTGTCGTACTGATACTGGCGCTGTACCCAAAACCCGCCTGCCCTGACCGGGAGGCGGGTTTTTTACGTCTTCAGGTTCAGCGTGGTCCCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCTCCATCAGCCGTTCACCGTTGCCAGCGCTACCGTATTCGCG > NC_002947/446992‑447289 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |