New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 529666	NA (NA)	15 (0.300)	9/238	NT	NA	noncoding (2901/2902 nt)	PP_23SC	23S ribosomal RNA
	?	NC_002947	= 529693	NA (NA)					intergenic (+26/‑94)	PP_23SC/PP_5SC	23S ribosomal RNA/5S ribosomal RNA

AAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAACC  >  NC_002947/529574‑529814                                                                                             |                                                                                                                                                      atctcTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTaa                                                                                             <  1:791612/146‑1 (MQ=14)    aCTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGAGTTGATTGCCGCGACAGGAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGc                                                                                          <  2:748838/150‑1 (MQ=11)      tACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAACGACACGAAAATGCGTAAgagag                                                                                        >  2:791612/1‑146 (MQ=255)      tACGACGTTGATAGGTTGGGCGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGACATTTCGTAAGGcaa                                                                                        >  2:572252/1‑148 (MQ=255)                    gTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACAATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCatat                                                                          >  2:561948/1‑150 (MQ=255)                         gtgtgtAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAg                                                                                            >  2:463974/1‑127 (MQ=32)                         gtgtgtAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAg                                                                                            <  1:463974/127‑1 (MQ=32)                         gtgtgtAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGaa                                                                     <  2:1027047/150‑1 (MQ=255)                               aaGCGCTGTGAGGAATTGAGCTAACCAATACAACTTCCCCGTGAGGCTTGACCATATAACACCCAAGCAATTTGCTGACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGACCACAAATATCGCATATCCGAATTCGc                                                                <  1:1216436/150‑1 (MQ=14)                                   gcTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGc                                                           >  1:171210/1‑150 (MQ=255)                                      gtgAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGt                                                        <  1:864110/150‑1 (MQ=255)                                           gCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAGCACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATc                                                   <  1:1373678/150‑1 (MQ=255)                                            cGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGAGGTGGTGAAGACGAAAGCCTCAGAAAGTCGTAATGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCt                                                  <  1:885397/150‑1 (MQ=18)                                                       ccAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTgg                                       <  1:1144304/150‑1 (MQ=255)                                                        cAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCt                                                               >  2:968215/1‑125 (MQ=255)                                                        cAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCt                                                               <  1:968215/125‑1 (MQ=255)                                                        cAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTc                                          >  2:1144783/1‑146 (MQ=255)                                                        cAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTc                                          <  1:1144783/146‑1 (MQ=255)                                                              tAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCt                                         <  1:192391/141‑1 (MQ=255)                                                              tAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCt                                         >  2:192391/1‑141 (MQ=255)                                                                  tGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTg                                        >  2:1351553/1‑138 (MQ=255)                                                                  tGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTg                                        <  1:1351553/138‑1 (MQ=255)                                                                     ccGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGTTAACTTTTCTATCTGGACATTCTGGCAACAGAATTTCtt                         >  1:1026614/1‑150 (MQ=21)                                                                     ccGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTg                                        >  2:1360321/1‑135 (MQ=255)                                                                     ccGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTg                                        <  1:1360321/135‑1 (MQ=255)                                                                      cGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTg                        >  1:824292/1‑150 (MQ=255)                                                                                        aaCACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTgg      >  2:729417/1‑150 (MQ=255)                                                                                           acCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACTATAGAGCATTGGAac   >  2:376260/1‑150 (MQ=255)                                                                                            cccAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGTCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAacc  <  1:729417/150‑1 (MQ=255)                                                                                             ccAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTg                        <  2:1013111/127‑1 (MQ=255)                                                                                             ccAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTg                        >  1:1013111/1‑127 (MQ=255)                                                                                             ccAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGc           <  1:1182373/140‑1 (MQ=255)                                                                                             ccAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGc           >  2:1182373/1‑140 (MQ=255)                                                                                             |                                                                                                                                                      AAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAACC  >  NC_002947/529574‑529814

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.