| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 529666 | NA (NA) | 15 (0.300) | 9/238 | NT | NA | noncoding (2901/2902 nt) | PP_23SC | 23S ribosomal RNA |
| ? | NC_002947 | = 529693 | NA (NA) | intergenic (+26/‑94) | PP_23SC/PP_5SC | 23S ribosomal RNA/5S ribosomal RNA | |||||
AAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCA > NC_002947/529574‑529836 | atctcTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTaa < 1:791612/146‑1 (MQ=14) aCTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGAGTTGATTGCCGCGACAGGAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGc < 2:748838/150‑1 (MQ=11) tACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAACGACACGAAAATGCGTAAgagag > 2:791612/1‑146 (MQ=255) tACGACGTTGATAGGTTGGGCGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGACATTTCGTAAGGcaa > 2:572252/1‑148 (MQ=255) gTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACAATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCatat > 2:561948/1‑150 (MQ=255) gtgtgtAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAg > 2:463974/1‑127 (MQ=32) gtgtgtAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAg < 1:463974/127‑1 (MQ=32) gtgtgtAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGaa < 2:1027047/150‑1 (MQ=255) aaGCGCTGTGAGGAATTGAGCTAACCAATACAACTTCCCCGTGAGGCTTGACCATATAACACCCAAGCAATTTGCTGACGCAGATTGCGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGACCACAAATATCGCATATCCGAATTCGc < 1:1216436/150‑1 (MQ=14) gcTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGc > 1:171210/1‑150 (MQ=255) gtgAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGt < 1:864110/150‑1 (MQ=255) gCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAGCACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATc < 1:1373678/150‑1 (MQ=255) cGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGAGGTGGTGAAGACGAAAGCCTCAGAAAGTCGTAATGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCt < 1:885397/150‑1 (MQ=18) ccAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTgg < 1:1144304/150‑1 (MQ=255) cAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCt < 1:968215/125‑1 (MQ=255) cAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCt > 2:968215/1‑125 (MQ=255) cAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTc < 1:1144783/146‑1 (MQ=255) cAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTc > 2:1144783/1‑146 (MQ=255) tAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCt < 1:192391/141‑1 (MQ=255) tAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCt > 2:192391/1‑141 (MQ=255) tGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTg < 1:1351553/138‑1 (MQ=255) tGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTg > 2:1351553/1‑138 (MQ=255) ccGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGTTAACTTTTCTATCTGGACATTCTGGCAACAGAATTTCtt > 1:1026614/1‑150 (MQ=21) ccGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTg < 1:1360321/135‑1 (MQ=255) ccGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTg > 2:1360321/1‑135 (MQ=255) cGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTg > 1:824292/1‑150 (MQ=255) aaCACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTgg > 2:729417/1‑150 (MQ=255) accaccacAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCCCTGGGCTGTCCGTCTGGACATTCTGGCAACAGAACTTCTTGACGACCATAGAGCAtt < 1:724905/138‑1 (MQ=21) accaccacAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCCCTGGGCTGTCCGTCTGGACATTCTGGCAACAGAACTTCTTGACGACCATAGAGCAtt > 2:724905/8‑145 (MQ=21) acCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACTATAGAGCATTGGAac > 2:376260/1‑150 (MQ=255) cccAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGTCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAacc < 1:729417/150‑1 (MQ=255) ccAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTg > 1:1013111/1‑127 (MQ=255) ccAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTg < 2:1013111/127‑1 (MQ=255) ccAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGc < 1:1182373/140‑1 (MQ=255) ccAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGc > 2:1182373/1‑140 (MQ=255) caccacAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTga < 1:682239/123‑1 (MQ=255) caccacAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTga > 2:682239/6‑128 (MQ=255) cAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCAtt < 1:933068/142‑1 (MQ=255) cAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCAtt > 2:933068/1‑142 (MQ=255) aaGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAaccacc > 1:156637/1‑150 (MQ=255) aCGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGatcccatccc < 1:895460/150‑1 (MQ=255) gCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTg > 2:1346950/1‑73 (MQ=255) gCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTg < 1:1346950/73‑1 (MQ=255) cAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACAtt > 2:1135857/1‑91 (MQ=255) cAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACAtt < 1:1135857/91‑1 (MQ=255) cAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGaa < 1:896641/150‑1 (MQ=255) aGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAAc > 2:897459/1‑150 (MQ=255) gATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACt > 2:814213/1‑150 (MQ=255) ttGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCATCATAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCa < 2:1058851/150‑1 (MQ=255) ttGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCa < 2:824292/150‑1 (MQ=255) tggtgAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCa > 2:1367185/1‑47 (MQ=255) tggtgAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCa < 1:1367185/47‑1 (MQ=255) | AAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCT‑ACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCA > NC_002947/529574‑529836 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |