New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1146416 =	45 (0.860)	3 (0.060)	3/236	NT	7.1%	coding (1653/2589 nt)	PP_1006	heme receptor
	?	NC_002947	1146533 =	35 (0.690)					coding (1536/2589 nt)	PP_1006	heme receptor

TCGTTGAAGGCGTAGGTCAGGCCGAACTTGGGCGAGACGCGGTGCCACTTCTTGTCCGAATCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGTCGCTGACCAAGGCCTGCCCGTCACGCGCGCTGTCCTGTCCGATGGCTGTACAG  >  NC_002947/1146267‑1146557                                                                                                                                                      |                                                                                                                                                aattggacaaggccttcagcatttgccaaaccgaccacctgtttacctacggcaccacactcacacaggagaaagtcacgggttcacgtagcggcaccgggccttgcctgcacatcggcggtacctgtaccgccatcggacaggacggcg                                                                                                                                                 <  1:911787‑M1/1‑1 (MQ=255)  cGTTGAAGGCGTAGGTCAGGCCGAACTTGGGCGAGACGCGGTGCCACTTCTTGTCCGAATCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAgc                                                                                                                                                <  1:71706/150‑1 (MQ=255)   ttggacaaggccttcagcattggccaaaccgaccacctgtttacctacggcaccacactcaaacaggagaaagtcacgggttcacgtagcggcaccggcacttgcctgaacatcggtggtacctgtacagccatcggacaggacagcgcg                                                                                                                                               <  1:204190‑M1/3‑1 (MQ=255)    tggacaaggccttcagcattggccaaaccgaccacctgtttacctacggcaccacactcaaacaggagaaagtcacgggttcacgtagcggcaccggcacttgcctgaacatcggtggtacctgtacagccatcggacaggacagcgcgc                                                                                                                                              >  2:463815‑M1/147‑150 (MQ=255)         aaggccttcagcattggccaaaccgaccacctgtttacctacggcaccacactcaaacaggagacagtcacgggttcacgtagcggcacaggcaattgcctgaacatcggtggtacctgtacagccatcggacaggacagcGCGCGCGcc                                                                                                                                         <  2:690652‑M1/9‑1 (MQ=255)            gTAGGTCAGGCCGAACTTGGGCGAGACGCGGTGCCACTTCTTGTCCGAATCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCggg                                                                                                                                      >  1:618253/1‑150 (MQ=255)                 tCAGGCCGAACTTGGGCGAGACGCGGTGCCACTTCTTGTCCGAATCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGa                                                                                                                                 <  2:1180504/150‑1 (MQ=255)                        gAACTTGGGCGAGACGCGGTGCCACTTCTTGTCCGAATCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCa                                                                                                                          <  1:1153468/150‑1 (MQ=255)                        gAACTTGGGCGAGACGCGGTGCCACTTCTTGTCCGAATCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCa                                                                                                                          >  2:142501/1‑150 (MQ=255)                            ttGGGCGAGACGCGGTGCCACTTCTTGTCCGAATCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAgttg                                                                                                                      >  1:1125296/1‑150 (MQ=255)                            ttGGGCGAGACGCGGTGCCACTTCTTGTCCGAATCGTCCTGGGCGGTAGGCGCCGTACCGCTGAACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGAGCGCGCCGGGCATGAAGGTCCAgttg                                                                                                                      >  1:660882/1‑150 (MQ=255)                                gCGAGACGCGGTGCCACTTCTTGTCCGAATCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTcc                                                                                                                  >  2:1175348/1‑150 (MQ=255)                                      cgcgGTGCCACTTCTTGTCCGAATCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGa                                                                                                            <  2:1126241/150‑1 (MQ=255)                                                 ttcttGTCCGAATCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTgc                                                                                                 <  2:1125296/150‑1 (MQ=255)                                                       tCCGAATCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAAc                                                                                           >  1:131322/1‑150 (MQ=255)                                                        ccGAATCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACa                                                                                          <  2:131322/150‑1 (MQ=255)                                                          gAATCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAgg                                                                                        >  1:97187/1‑150 (MQ=255)                                                          gAATCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAgg                                                                                        >  1:662035/1‑150 (MQ=255)                                                           aaTCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGc                                                                                       <  2:682486/150‑1 (MQ=255)                                                            aTCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCt                                                                                      >  2:738122/1‑150 (MQ=255)                                                            aTCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCt                                                                                      <  1:1121051/150‑1 (MQ=255)                                                                tCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAg                                                                                  >  1:399428/1‑150 (MQ=255)                                                                        ggTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CAc                                                                        <  1:142501/150‑1 (MQ=255)                                                                          tAGGCGCCGTACCGCTGGACTCCCGACCGCGCAGGAATTGCTCCGTGAATTTGTGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑TACgg                                                                      >  2:911787/1‑150 (MQ=255)                                                                              cgcCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCgg                                                                  <  2:618253/150‑1 (MQ=255)                                                                              cgcCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCgg                                                                  <  1:1175348/150‑1 (MQ=255)                                                                                      acgtagcggcaccggcacttgcctgaacatcggtggtacctgtacagccatcggacaggacagcGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGa                                                          <  1:89534‑M1/86‑1 (MQ=255)                                                                                       gCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTgcgc                                                                                               <  1:836524/114‑1 (MQ=255)                                                                                       gCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTgcgc                                                                                               >  2:836524/1‑114 (MQ=255)                                                                                       gCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGaa                                                         <  2:97187/150‑1 (MQ=255)                                                                                         tGGACTCACGACAGCGCAGGAATTCCGCCGTTAATTTGGTCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGt                                                       <  2:662035/150‑1 (MQ=255)                                                                                           gACTCCAGACCGCGCAGGAATTCATACGTGAATTTGCGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGTCg                                                     >  2:521357/1‑150 (MQ=255)                                                                                              tCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGTCGCTg                                                  >  1:1104432/1‑150 (MQ=255)                                                                                                cAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAg                                                                                                                         <  1:799620/79‑1 (MQ=255)                                                                                                cAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAg                                                                                                                         >  2:799620/1‑79 (MQ=255)                                                                                                     cgcgCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAg                                                                                                                               >  2:536593/1‑68 (MQ=255)                                                                                                     cgcgCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAg                                                                                                                               <  1:536593/68‑1 (MQ=255)                                                                                                      gcgcAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGTCGCTGACCAAGGc                                          <  2:399428/150‑1 (MQ=255)                                                                                                          aGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAg                                                                                  >  2:954755/1‑108 (MQ=255)                                                                                                          aGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAg                                                                                  <  1:954755/108‑1 (MQ=255)                                                                                                          aGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGTCGCTGACCAAGGCCTGc                                      <  1:443615/150‑1 (MQ=255)                                                                                                                 catcggtggtacctgtacagccatcggacaggacagcGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGTCGCTGACCAAGGCCTGCCCGTCAc                               >  2:89534‑M1/38‑150 (MQ=255)                                                                                                                   tcggtggtacctgtacagccatcggacaggacagcGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGTCGCTGACCAAGGCCTGCCCGTCAcgc                             >  1:690652‑M1/36‑150 (MQ=255)                                                                                                                     cGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGTCGCt                                                   >  1:472256/1‑126 (MQ=255)                                                                                                                     cGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGTCGCt                                                   <  2:472256/126‑1 (MQ=255)                                                                                                                      gTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACCGGTGGTGAGTAGT‑‑GACGGTCGGGTCCGGGAAGTCGCTGACCAAGGCCTGCCCGTCAcgcgcg                          >  2:1261963/1‑150 (MQ=255)                                                                                                                      gTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGTc                                                      >  2:894472/1‑122 (MQ=255)                                                                                                                      gTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGTc                                                      <  1:894472/122‑1 (MQ=255)                                                                                                                             tGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGTCGCTGACGCTGAAGTGCCCGTCACGCGCGctgtcct                   <  1:1261963/150‑1 (MQ=255)                                                                                                                                    cATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACA‑‑CCGTTGCCATTACCACTGTTGGGTCCGGGAAGTCGCTGAAAAAGGCCTACCCGTCACGCGCGCTGTCCTGTCCGAt            >  1:738821/1‑150 (MQ=255)                                                                                                                                        cGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGTCGCTGACCAAGGCCTGCCCGTCACGCGCGCTGTCCTGTCCGATGGCt        >  2:1207480/1‑150 (MQ=255)                                                                                                                                            tgtAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGTCGCTGACCAAGGCCTGCCCGTCACGCGCGCTGTCCTGTCCGATGGCTGTAc    <  2:68351/150‑1 (MQ=255)                                                                                                                                              tAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGTCGCTGACCAAGGCCTGCCCGTCACGCGCGCTGTCCTGTCCGATGGCTGTACAg  <  2:1104432/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                TCGTTGAAGGCGTAGGTCAGGCCGAACTTGGGCGAGACGCGGTGCCACTTCTTGTCCGAATCGTCCTGGGCGGTAGGCGCCGTACCGCTGGACTCCAGACCGCGCAGGAATTCCTCCGTGAATTTGGGCTCCATGCGGGTGTAGTCGTAGCGCGCGCCGGGCATGAAGGTCCAGTTGTTCCAGCGGATTTCATCCTGCGCGAACAGGCTGTAGGTATT‑‑CACGGTCGGGTCCGGGAAGTCGCTGACCAAGGCCTGCCCGTCACGCGCGCTGTCCTGTCCGATGGCTGTACAG  >  NC_002947/1146267‑1146557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.