New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1418455	42 (0.800)	6 (0.120)	6/232	NT	12.6%	intergenic (+16/+83)	PP_t14/PP_1241	tRNA‑Ser/hypothetical protein
	?	NC_002947	= 1418473	44 (0.890)					intergenic (+34/+65)	PP_t14/PP_1241	tRNA‑Ser/hypothetical protein

TTTGCGTTTTAAAAGAACGCTGGTATGATGCGCGGCATTGGAGAGATGCCGGAGTGGTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGAGCTCTACACCTAACGCAACCATCAGTTT  >  NC_002947/1418311‑1418603                                                                                                                                                 |                                                                                                                                                     tttGCGTTTTAAAAGAACGCTGGTATGATGCGAGGCATTGGAGAGATGCCGGAGTGGGCAAACGGGACCGATTCGAAATCCGTTGCACTGGCAACAGTACCTAGGGTTCAAATCCATATCTATCCGCCATACAACATCAAGCCCCTGGaa                                                                                                                                                 <  2:448796/150‑1 (MQ=255)    gcattttAAAAGAACGCTGGGATGGTGCGCTGCATTGGGGGTATGCCGTAGTGGTCGAACGGGACGGATTCGAAATCCGTTGTACTCGCAACAGTAGCTGCGGCCTAAAGCTCTAGCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCg                                                                                                                                              >  2:1020845/4‑150 (MQ=255)       ttttAAAAGAACGCTGGTATGATGCGCGGCATTGGAGAGATGCCGGAGTGGTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGaaa                                                                                                                                           >  1:495204/1‑150 (MQ=255)            aaaGAACGCTGGTATGATGCGCGGCATTGGAGAGATGCCGGAGTGGTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCGCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCttt                                                                                                                                      >  1:1067580/1‑150 (MQ=255)                aaCGCTGGTATGATGCGCGGCATTGGAGAGATGCCGGAGTGGTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCcgaaagctttcgcttccagg                                                                                                                                  <  1:504397‑M1/150‑21 (MQ=255)                       gTATGATGCGCGGCATTGGAGAGATGCCGGAGTGGTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCtttt                                                                                                                           >  2:1103438/1‑150 (MQ=255)                               cgcgGCATTGGAGAGATGCCGGAGTGGTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATg                                                                                                                   <  1:337579/150‑1 (MQ=255)                                gcgGCATTGGAGAGATGCCGGAGTGGTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCCGATAGCTTTCGCTTCCAggggcttgatcttgtatg                                                                                                                  >  1:337606‑M2/1‑132 (MQ=255)                                   gCATTGGAGAGATGCCGGAGTTGTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAATATCAAGCTCCTGGAAGCTAAAGCTTTCGGGGGCTTTTTCGTTATGGAAg                                                                                                               <  2:569110/150‑1 (MQ=255)                                                         gTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCCGAAAGCTTTCGCTTCCAggggcttgatcttgtatggcggagagatag                                                                                                      >  2:937577‑M2/1‑107 (MQ=255)                                                         gTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCCGAAAGCTTTCGCTTCCAggggcttgatcttgtatggcggagagatag                                                                                                      <  1:937577‑M2/137‑31 (MQ=255)                                                             aaCGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTaa                                                                                     <  1:1020845/150‑1 (MQ=255)                                                             aaCGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTaa                                                                                     <  2:495204/150‑1 (MQ=255)                                                               cGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAAtt                                                                                   <  1:138419/150‑1 (MQ=255)                                                                gggACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTAc                                                                                                   <  2:372574/133‑1 (MQ=255)                                                                gggACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTAc                                                                                                   >  1:372574/1‑133 (MQ=255)                                                                gggACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTg                                                                                  >  1:1299881/1‑150 (MQ=255)                                                                     ggATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGa                                                                             <  1:1066215/150‑1 (MQ=255)                                                                           gAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGaa                                                                                                                <  1:945997/109‑1 (MQ=255)                                                                           gAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGaa                                                                                                                >  2:945997/1‑109 (MQ=255)                                                                             aaTCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTaa                                                                     <  1:1300409/150‑1 (MQ=255)                                                                               tCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCcgaaagctttcgcttccaggggcttgatctt                                                                                                                       <  2:1215893‑M1/98‑32 (MQ=255)                                                                               tCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCcgaaagctttcgcttccaggggcttgatctt                                                                                                                       >  1:1215893‑M1/1‑67 (MQ=255)                                                                                  gTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCaa                                                                <  2:1067580/150‑1 (MQ=255)                                                                                        cTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGccc                                                          <  2:1299881/150‑1 (MQ=255)                                                                                           gCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGa                                                       >  1:306779/1‑150 (MQ=255)                                                                                             aaCAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCCAAGATTTAAAGCCAGTATACTAATTGCCCGCGCGCTTAAATCCAGAGCCCGGaac                                                     >  1:21080/1‑149 (MQ=255)                                                                                             aaCAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTAc                                                                                                   >  2:856934/1‑104 (MQ=255)                                                                                             aaCAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTAc                                                                                                   <  1:856934/104‑1 (MQ=255)                                                                                             aaCAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCATCATGCTAATTGCCCAAGCGCTTAAATCAAGAACCCGGAAg                                                     >  2:674127/1‑150 (MQ=255)                                                                                             aaCAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAg                                                     <  2:929331/150‑1 (MQ=255)                                                                                                    ccTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCg                                              >  1:592373/1‑150 (MQ=255)                                                                                                     cTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGccc                                                                               <  2:664336/116‑1 (MQ=255)                                                                                                     cTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGccc                                                                               >  1:664336/1‑116 (MQ=255)                                                                                                      tAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGATATGGCAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTACATCAAGAGCCCGGAAGCTTCTCGAg                                            >  1:547326/1‑150 (MQ=255)                                                                                                          gTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGc                                        <  1:1103438/150‑1 (MQ=255)                                                                                                              aaaTCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGAt                                                                                                       <  2:874834/83‑1 (MQ=255)                                                                                                              aaaTCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGAt                                                                                                       >  1:874834/1‑83 (MQ=255)                                                                                                              aaaTCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGa                                    <  2:592373/150‑1 (MQ=255)                                                                                                              aaaTCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGCACTTTTTCGTTATGGACGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGa                                    >  2:600981/1‑150 (MQ=255)                                                                                                                    cTATCTCTCCGCCATACAAGATCAAGCCCCtggaagcgaaagctttcgggggcttgatcttgtatggcggagagatagggatttgaaccctaggtactgttgccagtacaacggatttcgaatccgtcccgttcgac                                           >  2:937577‑M1/1‑30 (MQ=255)                                                                                                                    cTATCTCTCCGCCATACAAGATCAAGCCCCtggaagcgaaagctttcgggggcttgatcttgtatggcggagagatagggatttgaaccctaggtactgttgccagtacaacggatttcgaatccgtcccgttcgac                                           <  1:937577‑M1/137‑108 (MQ=255)                                                                                                                    cTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGa                              >  1:1227763/1‑150 (MQ=255)                                                                                                                     tATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGAg                             <  2:1227763/150‑1 (MQ=255)                                                                                                                           tcCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGAGCTCTac                       >  2:715332/1‑150 (MQ=255)                                                                                                                             cGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTAca                                                                                                  <  1:725175/73‑1 (MQ=255)                                                                                                                             cGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTAca                                                                                                  >  2:725175/1‑73 (MQ=255)                                                                                                                                cATACAAGATCAAGCCCCtggaagcgaaagctatcgggggcttgatcttgtatggcggagagatagggatttgaaccctaggtactgttgccagtacaacggatttcgaatccgtcccgttcgaccactccggcatctctccaatgccgc                  >  1:337606‑M1/1‑18 (MQ=255)                                                                                                                                 aTACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGaa                                                                                                                <  1:452272/55‑1 (MQ=255)                                                                                                                                 aTACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGaa                                                                                                                >  2:452272/1‑55 (MQ=255)                                                                                                                                    cAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACtgt                                <  2:175245/132‑1 (MQ=255)                                                                                                                                    cAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACtgt                                >  1:175245/1‑132 (MQ=255)                                                                                                                                     aaGATCAAGCCCCTGGAAGCGAAAGCTTTCGggggcttgatcttgtatggcggagagatagggatttgaaccctaggtactgttgccagtacaacgga                                                                 >  1:1215893‑M2/1‑31 (MQ=255)                                                                                                                                     aaGATCAAGCCCCTGGAAGCGAAAGCTTTCGggggcttgatcttgtatggcggagagatagggatttgaaccctaggtactgttgccagtacaacgga                                                                 <  2:1215893‑M2/98‑68 (MQ=255)                                                                                                                                             gCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGAGctc                          >  2:35713/1‑129 (MQ=255)                                                                                                                                             gCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGAGctc                          <  1:35713/129‑1 (MQ=255)                                                                                                                                                ccTGGAAGCGAAAGCTTTCGggggcttgatcttgtatggcggagagatagggatttgaaccctaggtactgttgccagtacaacggatttcgaatccgtcccgttcgaccactccggcatctctccaatgccgcgcatcataccagcgtt  <  1:504397‑M2/150‑131 (MQ=255)                                                                                                                                                 |                                                                                                                                                     TTTGCGTTTTAAAAGAACGCTGGTATGATGCGCGGCATTGGAGAGATGCCGGAGTGGTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGAGCTCTACACCTAACGCAACCATCAGTTT  >  NC_002947/1418311‑1418603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.