| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1418455 | 42 (0.800) | 6 (0.120) | 6/232 | NT | 12.6% | intergenic (+16/+83) | PP_t14/PP_1241 | tRNA‑Ser/hypothetical protein |
| ? | NC_002947 | = 1418473 | 44 (0.890) | intergenic (+34/+65) | PP_t14/PP_1241 | tRNA‑Ser/hypothetical protein | |||||
GTATGATGCGCGGCATTGGAGAGATGCCGGAGTGGTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGAGCTCTACACCTAACGCAACCATCAGTTTTTGAATAGTG > NC_002947/1418333‑1418613 | gTATGATGCGCGGCATTGGAGAGATGCCGGAGTGGTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCtttt > 2:1103438/1‑150 (MQ=255) cgcgGCATTGGAGAGATGCCGGAGTGGTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATg < 1:337579/150‑1 (MQ=255) gcgGCATTGGAGAGATGCCGGAGTGGTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCCGATAGCTTTCGCTTCCAggggcttgatcttgtatg > 1:337606‑M2/1‑132 (MQ=255) gCATTGGAGAGATGCCGGAGTTGTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAATATCAAGCTCCTGGAAGCTAAAGCTTTCGGGGGCTTTTTCGTTATGGAAg < 2:569110/150‑1 (MQ=255) gTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCCGAAAGCTTTCGCTTCCAggggcttgatcttgtatggcggagagatag > 2:937577‑M2/1‑107 (MQ=255) gTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCCGAAAGCTTTCGCTTCCAggggcttgatcttgtatggcggagagatag < 1:937577‑M2/137‑31 (MQ=255) aaCGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTaa < 1:1020845/150‑1 (MQ=255) aaCGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTaa < 2:495204/150‑1 (MQ=255) cGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAAtt < 1:138419/150‑1 (MQ=255) gggACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTAc < 2:372574/133‑1 (MQ=255) gggACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTAc > 1:372574/1‑133 (MQ=255) gggACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTg > 1:1299881/1‑150 (MQ=255) ggATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGa < 1:1066215/150‑1 (MQ=255) gAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGaa > 2:945997/1‑109 (MQ=255) gAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGaa < 1:945997/109‑1 (MQ=255) aaTCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTaa < 1:1300409/150‑1 (MQ=255) gTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCaa < 2:1067580/150‑1 (MQ=255) cTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGccc < 2:1299881/150‑1 (MQ=255) gCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGa > 1:306779/1‑150 (MQ=255) aaCAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCCAAGATTTAAAGCCAGTATACTAATTGCCCGCGCGCTTAAATCCAGAGCCCGGaac > 1:21080/1‑149 (MQ=255) aaCAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTAc < 1:856934/104‑1 (MQ=255) aaCAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTAc > 2:856934/1‑104 (MQ=255) aaCAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCATCATGCTAATTGCCCAAGCGCTTAAATCAAGAACCCGGAAg > 2:674127/1‑150 (MQ=255) aaCAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAg < 2:929331/150‑1 (MQ=255) ccTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCg > 1:592373/1‑150 (MQ=255) cTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGccc > 1:664336/1‑116 (MQ=255) cTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGccc < 2:664336/116‑1 (MQ=255) tAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGATATGGCAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTACATCAAGAGCCCGGAAGCTTCTCGAg > 1:547326/1‑150 (MQ=255) gTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGc < 1:1103438/150‑1 (MQ=255) aaaTCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGAt > 1:874834/1‑83 (MQ=255) aaaTCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGAt < 2:874834/83‑1 (MQ=255) aaaTCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGa < 2:592373/150‑1 (MQ=255) aaaTCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGCACTTTTTCGTTATGGACGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGa > 2:600981/1‑150 (MQ=255) cTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGa > 1:1227763/1‑150 (MQ=255) tATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGAg < 2:1227763/150‑1 (MQ=255) tcCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGAGCTCTac > 2:715332/1‑150 (MQ=255) cGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTAca > 2:725175/1‑73 (MQ=255) cGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTAca < 1:725175/73‑1 (MQ=255) aTACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGaa > 2:452272/1‑55 (MQ=255) aTACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGaa < 1:452272/55‑1 (MQ=255) cAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACtgt < 2:175245/132‑1 (MQ=255) cAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACtgt > 1:175245/1‑132 (MQ=255) aaGATCAAGCCCCTGGAAGCGAAAGCTTTCGggggcttgatcttgtatggcggagagatagggatttgaaccctaggtactgttgccagtacaacgga > 1:1215893‑M2/1‑31 (MQ=255) aaGATCAAGCCCCTGGAAGCGAAAGCTTTCGggggcttgatcttgtatggcggagagatagggatttgaaccctaggtactgttgccagtacaacgga < 2:1215893‑M2/98‑68 (MQ=255) gCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGAGctc < 1:35713/129‑1 (MQ=255) gCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGAGctc > 2:35713/1‑129 (MQ=255) ccTGGAAGCGAAAGCTTTCGggggcttgatcttgtatggcggagagatagggatttgaaccctaggtactgttgccagtacaacggatttcgaatccgtcccgttcgaccactccggcatctctccaatgccgcgcatcataccagcgtt < 1:504397‑M2/150‑131 (MQ=255) tGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGAGCTCTACACCTAACGCAACCATCAGttttt < 1:715332/150‑1 (MQ=255) gAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGAGCTCTACACCTAACGCAACCATCAGTTTTTGAATAgt > 1:226986/1‑150 (MQ=255) gAAAGCTTTAGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCTGAAGCTTCTCGAGCGGCCTGACTGTGAGCTCTACACCTAACGCAACCATCAGTTTTTGAATAgt < 2:21080/150‑1 (MQ=255) aaaGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGAGCTCTACACCTAACCCAACCATCAGGTTTGGAATAgtg < 2:1059490/150‑1 (MQ=255) | GTATGATGCGCGGCATTGGAGAGATGCCGGAGTGGTCGAACGGGACGGATTCGAAATCCGTTGTACTGGCAACAGTACCTAGGGTTCAAATCCCTATCTCTCCGCCATACAAGATCAAGCCCCTGGAAGCGAAAGCTTTCGGGGGCTTTTTCGTTATGGAAGGCAAAGATTTACAGCCAGCATGCTAATTGCCCGAGCGCTTAAATCAAGAGCCCGGAAGCTTCTCGAGCGGCCTGACTGTGAGCTCTACACCTAACGCAACCATCAGTTTTTGAATAGTG > NC_002947/1418333‑1418613 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |