New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2660074 =	50 (0.950)	5 (0.100)	4/228	NT	9.7%	coding (305/1536 nt)	PP_2331	membrane protein
	?	NC_002947	2660112 =	47 (0.970)					coding (267/1536 nt)	PP_2331	membrane protein

GCGCCATCAGGGCTTCAGCGGCGATCTTCTCGGGGCCTTCGACGGCCAGGCTGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGACC  >  NC_002947/2659925‑2660205                                                                                                                                                      |                                                                                                                                    gcgcCATCAGGGCTTCAGCGGCGATCTTCTCGGGGCCTTCGACGGCCAGGCTGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGAc                                                                                                                                     <  1:718724/150‑1 (MQ=255)   gcCATCAGGGCTTCAGCGGCGATCTTCTCGGGGCCTTCGACGGCCAGGCTGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGt                                                                                                                                   >  1:498145/1‑150 (MQ=255)   gacctgtggaacatcgacgccaaggtcgagttcgtggccagcagcaaggacccggtcaaggtgcagatgttcgtgccaccgctgaaccgcgactacgtcagcctcaacgagagcttcatctccaacaactacggggtcagcatcaacCGt                                                                                                                                   <  1:484227‑M1/3‑1 (MQ=255)    acctgtggaacatcgacgccaaggtcgagttcgtggccagcagcaaggacccggtcaaggtgcagatgttcgtgccaccgctgaaccgcgactacgtcaacgtcaacgagagcttcatctccaacaactacggggtcagcatcaacCGTg                                                                                                                                  <  1:313123‑M1/4‑1 (MQ=255)           tgCTTCAGCGGCGATCTTCTCGGGGCCTTCGACGGCCAGGCTGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCa                                                                                                                           <  1:516258/149‑1 (MQ=255)            gCTTCAGCGGCGATCTTCTCGCGGCCTTCGCCGGCCAGGCTGCCACGGAAGGTCGTGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTCCCACTGGCCCGACGTGCCCACCAg                                                                                                                          >  2:484227/1‑150 (MQ=255)                   cggcgATCTTCTCGGGGCCTTCGACGGCCAGGCTGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCt                                                                                                                   <  2:498145/150‑1 (MQ=255)                     gcgATCTTCTCGGGGCCTTCGACGGCCAGGCTGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTg                                                                                                                 <  2:362136/150‑1 (MQ=255)                       gATCTTCTCGGGGCCTTCGACGGCCAGGCTGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCg                                                                                                               >  1:353801/1‑150 (MQ=255)                                gttcgtggccagcagcaaggacccggtcaaggtgcagatgttcgtgccaccgctgaaccgcgactacgtcagcctcaacgagagcttcatctccaacaactacggggtcagcatcaacCGTGCCGACCAGGTAACCTTGCGGTTGCCGTc                                                                                                      >  1:988166‑M1/119‑150 (MQ=255)                                ggggCCTTCGACGGCCAGGCTGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCg                                                                                                                               >  2:267560/1‑125 (MQ=255)                                ggggCCTTCGACGGCCAGGCTGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCg                                                                                                                               <  1:267560/125‑1 (MQ=255)                                 gggCCTTCGACGGCCAGGCTGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGTTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCg                                                                                                     <  2:290666/150‑1 (MQ=255)                                      ttCGACGGCCAGGCTGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGATGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACg                                                                                                >  1:528459/1‑150 (MQ=255)                                              ccAGGCTGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATgt                                                                                        >  2:507055/1‑149 (MQ=255)                                               cAGGCTGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCt                                                                                       >  2:175594/1‑150 (MQ=255)                                               cAGGCTGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCt                                                                                       >  1:718714/1‑150 (MQ=255)                                                 ggCTGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGa                                                                                     <  1:175594/150‑1 (MQ=255)                                                    tGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGAccc                                                                                  >  2:107158/1‑150 (MQ=255)                                                       cACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGt                                                                               <  2:626930/150‑1 (MQ=255)                                                           gAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAgtt                                                                           >  1:1373134/1‑150 (MQ=255)                                                               gTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCCGTACCAGGCTGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCCAAACGCGAACGGTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGttgttg                                                                       <  1:748496/150‑1 (MQ=255)                                                               gTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGttgttg                                                                       <  1:1382530/150‑1 (MQ=255)                                                                   ggCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGgaga                                                                   <  2:703667/150‑1 (MQ=255)                                                                      cTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGa                                                                >  2:1093997/1‑150 (MQ=255)                                                                           aCCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGctc                                                           >  2:134981/1‑150 (MQ=255)                                                                                    ttctCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGga                                                                     >  2:910082/1‑131 (MQ=255)                                                                                    ttctCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGga                                                                     <  1:910082/131‑1 (MQ=255)                                                                                         gTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGga                                                                     >  2:273321/1‑126 (MQ=255)                                                                                         gTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGga                                                                     <  1:273321/126‑1 (MQ=255)                                                                                         ccgcgactacgtcagcctcaacgagagcttcatctccaacaactacggggtcagcatcaacCGTGCCGACCAGGTAACCTTGCGGTTGCCGTc                                                                                                      <  1:1158643‑M1/32‑1 (MQ=255)                                                                                         ccgcgactacgtcagcctcaacgagagcttcatctccaacaactacggggtcagcatcaacCGTGCCGACCAGGTAACCTTGCGGTTGCCGTc                                                                                                      >  2:1158643‑M1/62‑93 (MQ=255)                                                                                           gcgactacgtcagcctcaacgagagcttcatctccaacaactacggggtcagcatcaacCGTGCCGACCAGGTAACCTTGCGGTTGCCGt                                                                                                       >  1:430123‑M1/60‑90 (MQ=255)                                                                                           gcgactacgtcagcctcaacgagagcttcatctccaacaactacggggtcagcatcaacCGTGCCGACCAGGTAACCTTGCGGTTGCCGt                                                                                                       <  2:430123‑M1/31‑1 (MQ=255)                                                                                            gcgggaGCGTTTGGTCCGTCCCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACTGTTGATGCTGACCCCGTAGTTGTCGGAGATGAAGCTCTCGTTGAGGCTGACGTa                                          <  2:197809/145‑1 (MQ=255)                                                                                              tGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGgaga                                                                   >  1:1131988/1‑123 (MQ=255)                                                                                              tGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGgaga                                                                   <  2:1131988/123‑1 (MQ=255)                                                                                                          tCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTgg                                                                      >  1:705656/1‑108 (MQ=255)                                                                                                          tCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTgg                                                                      <  2:705656/108‑1 (MQ=255)                                                                                                          tCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGga                                                                     >  2:1207465/1‑109 (MQ=255)                                                                                                          tCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGga                                                                     <  1:1207465/109‑1 (MQ=255)                                                                                                              tACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTgg                        <  2:718714/150‑1 (MQ=255)                                                                                                                 cAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAgttgt                                                                         >  2:1135727/1‑98 (MQ=255)                                                                                                                 cAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAgttgt                                                                         <  1:1135727/98‑1 (MQ=255)                                                                                                                 cAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAg                                                              <  2:1004904/109‑1 (MQ=255)                                                                                                                 cAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAg                                                              >  1:1004904/1‑109 (MQ=255)                                                                                                                         agtagAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCt             <  2:353801/150‑1 (MQ=255)                                                                                                                            agagGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATg                                                                 <  2:1384096/95‑1 (MQ=255)                                                                                                                            agagGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATg                                                                 >  1:1384096/1‑95 (MQ=255)                                                                                                                            agagGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCa          >  2:478637/1‑150 (MQ=255)                                                                                                                             gagGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACAt               >  2:1333135/1‑144 (MQ=255)                                                                                                                             gagGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACAt               <  1:1333135/144‑1 (MQ=255)                                                                                                                                ggTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAg                                                   <  1:973254/105‑1 (MQ=255)                                                                                                                                ggTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAg                                                   >  2:973254/1‑105 (MQ=255)                                                                                                                                    tGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGAcc  <  1:134981/150‑1 (MQ=255)                                                                                                                                      gTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCtctc                                                         >  2:135173/1‑93 (MQ=255)                                                                                                                                      gTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCtctc                                                         <  1:135173/93‑1 (MQ=255)                                                                                                                                           cACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTcg                                      <  2:1229319/107‑1 (MQ=255)                                                                                                                                           cACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTcg                                      >  1:1229319/1‑107 (MQ=255)                                                                                                                                                      |                                                                                                                                    GCGCCATCAGGGCTTCAGCGGCGATCTTCTCGGGGCCTTCGACGGCCAGGCTGTCACGGAAGGTCGGGCCTTTGACCTTGGTCTTCTCGTTGCTGTAGCGCTTGGTCAGTACCAGGCGGTAGTAGAGGGTCTGGTTGCCACTGGCGCGACGTGCCGACCAGGTAACCTTGCGGTTGCCGTCGGCACGGTTGATGCTGACCCCGTAGTTGTTGGAGATGAAGCTCTCGTTGAGGCTGACGTAGTCGCGGTTCAGCGGTGGCACGAACATCTGCACCTTGACC  >  NC_002947/2659925‑2660205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.