New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3135695	40 (0.760)	4 (0.080)	3/236	NT	10.0%	coding (305/1335 nt)	PP_2752	hypothetical protein
	?	NC_002947	= 3135723	34 (0.670)					coding (333/1335 nt)	PP_2752	hypothetical protein

GATGATCGATTACTTACGCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTG  >  NC_002947/3135552‑3135843                                                                                                                                                |                                                                                                                                                     gatgatCGATTACTTACGCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGt                                                                                                                                                >  2:1321585/1‑150 (MQ=255)      tCGATTACTTACGCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGCCAACGAGTGTGACCATCGCTGCAAGAGCGGTCTCAATGGCGCTCCGGTGGCgg                                                                                                                                           >  2:944780/1‑150 (MQ=37)        gATTACTTACGCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTc                                                                                                                                         <  2:831378/150‑1 (MQ=255)               tacGCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGc                                                                                                                                  <  1:636919/150‑1 (MQ=255)                acGCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGcc                                                                                                                                 <  1:609643/150‑1 (MQ=255)                  gCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCa                                                                                                                               >  1:322762/1‑150 (MQ=255)                       aTCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATg                                                                                                                            <  1:9327/148‑1 (MQ=255)                       aTCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATg                                                                                                                            >  2:9327/1‑148 (MQ=255)                         cAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCaccattgggctggtagaccgccaccggagc                                                                                                                        <  1:279470‑M1/150‑31 (MQ=255)                           aCGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTgcgc                                                                                                                      >  2:1425521‑M2/1‑146 (MQ=255)                             gAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCg                                                                                                                    >  2:1034784/1‑150 (MQ=255)                                 tCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTg                                                                                                                >  1:1340952/1‑150 (MQ=255)                                  cGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCaccattgggctggtagaccgccaccggagcgccattgag                                                                                                               <  2:280974‑M1/150‑40 (MQ=255)                                       gctgcATCAATGGCGTCAAGCTGGTCGGGCAGGAATGTGAGACCGAGTGTACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCGGCCCAATGGTGCGCCGGCTGCCTATg                                                                                                          <  2:648419/147‑1 (MQ=255)                                       gcggcATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATg                                                                                                          >  2:810091/1‑150 (MQ=255)                                           cATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCt                                                                                                      >  1:660485/1‑150 (MQ=255)                                                  ggCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGAc                                                                                               <  2:322762/150‑1 (MQ=255)                                                    cGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACaa                                                                                             <  1:810091/150‑1 (MQ=255)                                                           cTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCCGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAaggccgag                                                                                      <  2:236639/150‑1 (MQ=255)                                                                  ggCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGAcc                                                                               <  1:613418/150‑1 (MQ=255)                                                                   gCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATg                                                                                                                            <  1:1207189/104‑1 (MQ=255)                                                                   gCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATg                                                                                                                            >  2:1207189/1‑104 (MQ=255)                                                                     aGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGa                                                                            >  1:421628/1‑150 (MQ=255)                                                                     aGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGa                                                                            <  1:1321585/150‑1 (MQ=255)                                                                          tgtgAGACCGAGTGGACGGCCGAGAACGGCATCGAGTGCTACGAGAGCTTGCAGCACAGACTAAATACCGCCACGGTGGCGGTCTACCAGCCCACTGGCGCGCCGGCTGCCTATGCACTGGCGGCAACGGCCGAGGCCGGCCGGACTccc                                                                       >  2:97588/1‑149 (MQ=255)                                                                            tgAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCt                                                                     >  2:862262/1‑150 (MQ=255)                                                                             gagaCCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGc                                                                                                                                             >  1:1399834/1‑77 (MQ=255)                                                                             gagaCCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGc                                                                                                                                             <  2:1399834/77‑1 (MQ=255)                                                                             gagaCCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTg                                                                    >  1:1399725/1‑150 (MQ=255)                                                                                  cGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGGTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTCGCGGACAACGCCGAGGCCGACCGGATTCCGCTGATCAc                                                               <  2:690134/150‑1 (MQ=255)                                                                                  cGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTc                                                                                                                                         <  2:1177496/76‑1 (MQ=255)                                                                                  cGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTc                                                                                                                                         >  1:1177496/1‑76 (MQ=255)                                                                                         aCGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGc                                                        <  2:1399725/150‑1 (MQ=255)                                                                                             ccGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGa                                                                            <  2:122354/126‑1 (MQ=255)                                                                                             ccGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGa                                                                            >  1:122354/1‑126 (MQ=255)                                                                                             ccGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATg                                                    <  1:790870/150‑1 (MQ=255)                                                                                                    gggCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTAc                                             <  1:944780/150‑1 (MQ=255)                                                                                                    gggCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATCGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTAc                                             <  1:1012667/150‑1 (MQ=255)                                                                                                       cATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGa                                          <  2:1346926/150‑1 (MQ=255)                                                                                                             gTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCaccattgggctggtagaccgccaccggagc                                                                                                                        <  2:364457‑M1/66‑31 (MQ=255)                                                                                                             gTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCaccattgggctggtagaccgccaccggagc                                                                                                                        >  1:364457‑M1/1‑36 (MQ=255)                                                                                                                     aGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTTGGCCCTGGGGGCCAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGcc                            >  1:1168486/1‑150 (MQ=255)                                                                                                                          ttCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGa                                          <  2:1277649/131‑1 (MQ=255)                                                                                                                          ttCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGa                                          >  1:1277649/1‑131 (MQ=255)                                                                                                                          ttCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTc                       >  1:323027/1‑150 (MQ=255)                                                                                                                                      cTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcactcgatgcccttctcggccgtccactcggtctcacattcctgccagaccagcttgacgccattgatgccgccttcg           <  2:280974‑M2/150‑112 (MQ=255)                                                                                                                                            ggCGCCCCGGTGGCGTTCTACCAGCCCAATGGTGCGCCGGCTGCCTATCCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCCCCGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCt     <  2:1168486/150‑1 (MQ=255)                                                                                                                                             gcgcaccattgggctggtagaccgccaccggagcgccattgaggccgttcttgaagcgctcgtagcactcgatgcccttctcggccgtccactcggtctcacattcctgccagaccagcttgacgccattgatgccgccttcgacttcgt    >  2:1425521‑M1/1‑4 (MQ=255)                                                                                                                                              cgcTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCtgt   <  2:1340952/150‑1 (MQ=255)                                                                                                                                               gcTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcactcgatgcccttctcggccgtccactcggtctcacattcctgccagaccagcttgacgccattgatgccgccttcgacttcgttg  <  1:279470‑M2/150‑121 (MQ=255)                                                                                                                                               gcTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcac                                                                                      <  2:364457‑M2/66‑37 (MQ=255)                                                                                                                                               gcTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcac                                                                                      >  1:364457‑M2/1‑30 (MQ=255)                                                                                                                                               gcTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGc                                                                      <  2:186735/82‑1 (MQ=255)                                                                                                                                               gcTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGc                                                                      >  1:186735/1‑82 (MQ=255)                                                                                                                                                |                                                                                                                                                     GATGATCGATTACTTACGCTACATCAACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGCCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTG  >  NC_002947/3135552‑3135843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.