New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3135695	40 (0.760)	4 (0.080)	3/236	NT	10.0%	coding (305/1335 nt)	PP_2752	hypothetical protein
	?	NC_002947	= 3135723	34 (0.670)					coding (333/1335 nt)	PP_2752	hypothetical protein

ACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGG‑CCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGATGTTGACCTTCTACAGCGAGG  >  NC_002947/3135578‑3135865                                                                                                                                                  |                                                                                                                                                aCGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTgcgc                                                                                                                                             >  2:1425521‑M2/1‑146 (MQ=255)   gAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCg                                                                                                                                           >  2:1034784/1‑150 (MQ=255)       tCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTg                                                                                                                                       >  1:1340952/1‑150 (MQ=255)             gctgcATCAATGGCGTCAAGCTGGTCGGGCAGGAATGTGAGACCGAGTGTACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCGGCCCAATGGTGCGCCGGCTGCCTATg                                                                                                                                 <  2:648419/147‑1 (MQ=255)             gcggcATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATg                                                                                                                                 >  2:810091/1‑150 (MQ=255)                 cATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCt                                                                                                                             >  1:660485/1‑150 (MQ=255)                        ggCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGAc                                                                                                                      <  2:322762/150‑1 (MQ=255)                          cGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACaa                                                                                                                    <  1:810091/150‑1 (MQ=255)                                 cTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCCGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAaggccgag                                                                                                             <  2:236639/150‑1 (MQ=255)                                        ggCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGAcc                                                                                                      <  1:613418/150‑1 (MQ=255)                                           aGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGa                                                                                                   <  1:1321585/150‑1 (MQ=255)                                           aGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGa                                                                                                   >  1:421628/1‑150 (MQ=255)                                                tgtgAGACCGAGTGGACGGCCGAGAACGGCATCGAGTGCTACGAGAGCTTGCAGCACAGACTAAATACCGCCACGGTGGCGGTCTACCAGCCCACTGGCGCGCCGGCTGCCTATGCACTGGCGGCAACGGCCGAGGCCGGCCGGACTccc                                                                                              >  2:97588/1‑149 (MQ=255)                                                  tgAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCt                                                                                            >  2:862262/1‑150 (MQ=255)                                                   gagaCCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTg                                                                                           >  1:1399725/1‑150 (MQ=255)                                                        cGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGGTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTCGCGGACAACGCCGAGGCCGACCGGATTCCGCTGATCAc                                                                                      <  2:690134/150‑1 (MQ=255)                                                               aCGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGc                                                                               <  2:1399725/150‑1 (MQ=255)                                                                   ccGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGa                                                                                                   >  1:122354/1‑126 (MQ=255)                                                                   ccGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGa                                                                                                   <  2:122354/126‑1 (MQ=255)                                                                   ccGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATg                                                                           <  1:790870/150‑1 (MQ=255)                                                                          gggCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTAc                                                                    <  1:944780/150‑1 (MQ=255)                                                                          gggCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATCGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTAc                                                                    <  1:1012667/150‑1 (MQ=255)                                                                             cATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGa                                                                 <  2:1346926/150‑1 (MQ=255)                                                                                           aGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTTGGCCCTGGGGGCCAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGG‑CCACCGATGGcc                                                  >  1:1168486/1‑150 (MQ=255)                                                                                                ttCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGa                                                                 <  2:1277649/131‑1 (MQ=255)                                                                                                ttCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGa                                                                 >  1:1277649/1‑131 (MQ=255)                                                                                                ttCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGG‑CCACCGATGGCCGCGTc                                             >  1:323027/1‑150 (MQ=255)                                                                                                            cTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcactcgatgcccttctcggccgtccactcggtctcacattcctgccagaccagcttgacgccattgatgccgccttcg                                  <  2:280974‑M2/150‑112 (MQ=255)                                                                                                                  ggCGCCCCGGTGGCGTTCTACCAGCCCAATGGTGCGCCGGCTGCCTATCCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCCCCGATCACCCTCGGCTATGGTCGTACCGAGG‑CCACCGATGGCCGCGTCTTTCCCTACAACTTCCCt                           <  2:1168486/150‑1 (MQ=255)                                                                                                                    cgcTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGG‑CCACCGATGGCCGCGTCTTTCCCTACAACTTCCCtgt                         <  2:1340952/150‑1 (MQ=255)                                                                                                                     gcTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcactcgatgcccttctcggccgtccactcggtctcacattcctgccagaccagcttgacgccattgatgccgccttcgacttcgttg                         <  1:279470‑M2/150‑121 (MQ=255)                                                                                                                     gcTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcac                                                                                                             >  1:364457‑M2/1‑30 (MQ=255)                                                                                                                     gcTCCGGTGGCGGTCTACCAGCCCAATGGTgcgccattgaggccgttcttgaagcgctcgtagcac                                                                                                             <  2:364457‑M2/66‑37 (MQ=255)                                                                                                                     gcTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGc                                                                                             <  2:186735/82‑1 (MQ=255)                                                                                                                     gcTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGc                                                                                             >  1:186735/1‑82 (MQ=255)                                                                                                                       tCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGG‑CCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGAt                      >  1:679640/1‑150 (MQ=255)                                                                                                                          ggTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGGAGCCCAGATCG‑CTCGTCTTTCCCTACAACTTCCCTGTGATGtt                   >  2:1404138/1‑150 (MQ=255)                                                                                                                                ggTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCAGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGG‑CCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGATGTTGACCtt             >  2:991212/1‑150 (MQ=255)                                                                                                                                       cAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTGTGGTCGTACCGAGG‑CCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGa                       <  2:1073056/133‑1 (MQ=255)                                                                                                                                       cAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTGTGGTCGTACCGAGG‑CCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGa                       >  1:1073056/1‑133 (MQ=255)                                                                                                                                           ccAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGG‑CCACCGATTGCCGCGTCTTTCCCTACAACTTCCCTGTGATGTTGACCTTCTACAGCGAgg  <  1:1034784/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                ACGAAGTCGAAGGCGGCATCAATGGCGTCAAGCTGGTCTGGCAGGAATGTGAGACCGAGTGGACGGCCGAGAAGGGCATCGAGTGCTACGAGCGCTTCAAGAACGGCCTCAATGGCGCTCCGGTGGCGGTCTACCAGCCCAATGGTGCGCCGGCTGCCTATGCCCTGGCGGACAAGGCCGAGGCCGACCGGATTCCGCTGATCACCCTCGGCTATGGTCGTACCGAGG‑CCACCGATGGCCGCGTCTTTCCCTACAACTTCCCTGTGATGTTGACCTTCTACAGCGAGG  >  NC_002947/3135578‑3135865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.