New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3760723	38 (0.720)	3 (0.060)	3/232	NT	7.8%	coding (28/2091 nt)	PP_3325	ferric siderophore receptor
	?	NC_002947	= 3760742	35 (0.710)					coding (47/2091 nt)	PP_3325	ferric siderophore receptor

ACCGTGGAGCCTGATGGTGTACCCGTTGTGATCCCCTTCGAGCTCGTGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACGGGCCGGTGCAAGGCTATCGTGCCAATCGCTCTGCCACGGCCACCCGC  >  NC_002947/3760583‑3760872                                                                                                                                             |                                                                                                                                                      acCGTGGAGCCTGATGGTGTACCCGTTGTGATCCCCTTCGAGCTCGTGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGc                                                                                                                                              >  2:1414303/1‑150 (MQ=255)    gTGGAGCCTGATGGTGTACCCGTTGTGATCCCCTTCGAGCTCGTGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTgg                                                                                                                                           >  2:887069/1‑150 (MQ=255)            tGATGGTGTACCCGTTGTGATCCCCTTCGAGCTCGTGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTc                                                                                                                                   >  2:348769‑M2/1‑149 (MQ=255)              aTGGTGTACCCGTTGTGATCCCCTTCGAGCTCGTGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTcgg                                                                                                                                 >  1:1414303‑M2/1‑147 (MQ=255)                         gTTGTGATCCCCTTCGAGCTCGTGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGc                                                                                                                                         >  2:879347/1‑131 (MQ=255)                         gTTGTGATCCCCTTCGAGCTCGTGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGc                                                                                                                                         <  1:879347/131‑1 (MQ=255)                               aTCCCCTTCGAGCTCGTGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGaacaagcccagcgtcaggccggccagaaggggggcacga                                                                                                                <  1:912991‑M1/150‑40 (MQ=255)                                 ccccTTCGAGCTCGTGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGca                                                                                                              <  1:887069/150‑1 (MQ=255)                                    cTTCGAGCTCGTGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACaa                                                                                                           <  2:30849/150‑1 (MQ=255)                                            tCGTGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTcg                                                                                                                                  >  1:841253‑M2/1‑117 (MQ=255)                                            tCGTGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTcg                                                                                                                                  <  2:841253‑M2/119‑3 (MQ=255)                                              gTGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTtgctgc                                                                                                 >  1:256936/1‑150 (MQ=255)                                              gTGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTtgctgc                                                                                                 >  1:71524/1‑150 (MQ=255)                                              gTGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTtgctgc                                                                                                 >  2:410993/1‑150 (MQ=255)                                               tGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTgctgct                                                                                                >  1:192416/1‑150 (MQ=255)                                                     gTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCtt                                                                                                      <  1:1099295/138‑1 (MQ=255)                                                     gTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCtt                                                                                                      >  2:1099295/1‑138 (MQ=255)                                                         ccAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAAcc                                                                                      <  2:256936/150‑1 (MQ=255)                                                                        tCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTggccggc                                                                                                                                                     >  2:451072/1‑72 (MQ=255)                                                                        tCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTggccggc                                                                                                                                                     <  1:451072/72‑1 (MQ=255)                                                                        tCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAAc                                                                                            >  2:359136/1‑129 (MQ=255)                                                                        tCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAAc                                                                                            <  1:359136/129‑1 (MQ=255)                                                                         ccAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTgctgct                                                                                                >  1:567166/1‑124 (MQ=255)                                                                         ccAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTgctgct                                                                                                <  2:567166/124‑1 (MQ=255)                                                                          caacaaTGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAAcc                                                                                                         >  2:896351/1‑114 (MQ=255)                                                                          caacaaTGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAAcc                                                                                                         <  1:896351/114‑1 (MQ=255)                                                                           aacaaTGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGaacaagcccagcgtcaggccggcc                                                                                                                               <  1:954490‑M1/91‑25 (MQ=255)                                                                           aacaaTGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGaacaagcccagcgtcaggccggcc                                                                                                                               >  2:954490‑M1/1‑67 (MQ=255)                                                                           aacaaTGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTAc                                                                    >  1:46407/1‑150 (MQ=255)                                                                                 gCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCCGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGaa                                                              <  1:1171153/150‑1 (MQ=255)                                                                                   aaCGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTAcc                                                                   >  2:1387388/1‑143 (MQ=255)                                                                                   aaCGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTAcc                                                                   <  1:1387388/143‑1 (MQ=255)                                                                                              gTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACg                                                 >  1:362497/1‑150 (MQ=255)                                                                                              gTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACg                                                 >  2:532292/1‑150 (MQ=255)                                                                                               tGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACgg                                                <  1:532292/150‑1 (MQ=255)                                                                                               tGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACgg                                                <  2:192416/150‑1 (MQ=255)                                                                                               tGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACgg                                                <  1:186092/150‑1 (MQ=255)                                                                                                 aaaaaCGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACGGGc                                              <  1:410993/150‑1 (MQ=255)                                                                                                             tttACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACGGGCCGGTGCAAGGCt                                  >  1:1282218/1‑150 (MQ=255)                                                                                                                        ccTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACGGGCCGGAGCAAGGCTATCGTGCCAAt                       >  2:938498/1‑150 (MQ=255)                                                                                                                          tCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTcggccagaaggggggcacgagggttcacgtaaagtctccgtttttcacgctataacgttgcattgttggatacgtcctgacttgggcactgtccacgagctcgaaggggat                     <  1:912991‑M2/150‑112 (MQ=255)                                                                                                                              gCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACGGGCCGGTGCAAGGCTATCGTGCCAATCGctct                 <  1:938498/150‑1 (MQ=255)                                                                                                                               ccccccATCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGCAACTCCCAACAATGACGCCTACCGCGGATAGCGCGCCGACGGGCCGGTGCAAGGCTATCGTGCCAATCGCTCTg                >  1:168790/1‑150 (MQ=255)                                                                                                                                cccccTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACGGGCCGGTGCAAGGCTATCGTGCCAATCGCTCTGc               >  2:280277/1‑150 (MQ=255)                                                                                                                                    cTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACGGGCCGGTGCAAGGCTATCGTGCCAATCGCTCTGCCACg           >  2:452422/1‑150 (MQ=255)                                                                                                                                     ttCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACGGGCCGGTGCAAGGCTATCGTGCCAATCGCTCTGCCACgg          >  2:879418/1‑150 (MQ=255)                                                                                                                                        tGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACGGGCCGGTGCAAGGCTATCGTGCCAATCGctct                 <  2:510828/140‑1 (MQ=255)                                                                                                                                        tGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACGGGCCGGTGCAAGGCTATCGTGCCAATCGctct                 >  1:510828/1‑140 (MQ=255)                                                                                                                                         ggccggccTGACGCTGGGCTTGTTcggccagaaggggggcacgagggttcacgtaaagtctccgtttttcacgctataacgttgcattgtt                                                                 <  1:954490‑M2/91‑68 (MQ=255)                                                                                                                                         ggccggccTGACGCTGGGCTTGTTcggccagaaggggggcacgagggttcacgtaaagtctccgtttttcacgctataacgttgcattgtt                                                                 >  2:954490‑M2/1‑24 (MQ=255)                                                                                                                                         ggccggccTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACGGGCCGGTGCAAGGCTATCGTGCCAATCGCTCTGCCACGGCCAc      >  1:542790/1‑150 (MQ=255)                                                                                                                                           ccGaacaagcccagcgtcaggccggccagaaggggggcacgagggttcacgtaaagtctccgtttttcacgctataacgttgcattgttggatacgtcctgacttgggcactgtccacgagctcgaaggggatcacaacgggtacaccat    >  1:1414303‑M1/1‑3 (MQ=255)                                                                                                                                            cGaacaagcccagcgtcaggccggccagaaggggggcacgagggttcacgtaaagtctccgtttttcacgctataacgttgcattgttggatacgtcctgacttgggcactgtccacga                                  <  2:841253‑M1/119‑118 (MQ=255)                                                                                                                                            cGaacaagcccagcgtcaggccggccagaaggggggcacgagggttcacgtaaagtctccgtttttcacgctataacgttgcattgttggatacgtcctgacttgggcactgtccacga                                  >  1:841253‑M1/1‑2 (MQ=255)                                                                                                                                             gaacaagcccagcgtcaggccggccagaaggggggcacgagggttcacgtaaagtctccgtttttcacgctataacgttgcattgttggatacgtcctgacttgggcactgtccacgagctcgaaggggatcacaacgggtacaccatca  >  2:348769‑M1/1‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                      ACCGTGGAGCCTGATGGTGTACCCGTTGTGATCCCCTTCGAGCTCGTGGACAGTGCCCAAGTCAGGACGTATCCAACAATGCAACGTTATAGCGTGAAAAACGGAGACTTTACGTGAACCCTCGTGCCCCCCTTCTGGCCGGCCTGACGCTGGGCTTGTTCGGCCAGCCGATTTCAGCGGCACAACCCTTGCTGCTGAACGAAACCTCCATCACCGACGCCTACCTCGAAGAGCGCGCCGACGGGCCGGTGCAAGGCTATCGTGCCAATCGCTCTGCCACGGCCACCCGC  >  NC_002947/3760583‑3760872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.