New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3777432 =	47 (0.890)	3 (0.060)	6/234	NT	6.2%	coding (443/2052 nt)	PP_3340	TonB‑dependent receptor
	?	NC_002947	3777447 =	46 (0.920)					coding (458/2052 nt)	PP_3340	TonB‑dependent receptor

CTCGGGCAAACTGTCGTTTCGCGGCTTCAATGGCGAAGGCGAAGTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAGGGCATC  >  NC_002947/3777283‑3777580                                                                                                                                                      |                                                                                                                                                      cTCGGGCAAACTGTCGTTTCGCGGCTTCAATGGCGAAGGCGAAGTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAgt                                                                                                                                                       >  1:238177/1‑150 (MQ=255)            tctcgatgcccttggccagttgcacctcgcgggtgttgaagctgccgtagcgcaggcgcgccttgttgtagttgccgccggtgcgggtgttgatattgacgttaccggcgatgttgttcaggccgtagcgtggatcgcTGGTGC‑GCGGCa                                                                                                                                           <  1:309048‑M1/12‑1 (MQ=255)                     gcgGCTTCAATGGCGAAGGCGAAGTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATc                                                                                                                                  >  1:719667/1‑150 (MQ=255)                     gcgGCTTCAATGGCGAAGGCGAAGTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATc                                                                                                                                  >  2:968252/1‑150 (MQ=255)                              aTGGCGAAGGCGAAGTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACg                                                                                                                         >  1:560231/1‑150 (MQ=255)                                ggcgaaggcgaaGTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGc                                                                                                                       <  1:618920/150‑1 (MQ=255)                                        cgaagTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGaacaa                                                                                                               <  2:719667/150‑1 (MQ=255)                                         gaagTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCt                                                                                                                     >  1:1413960/1‑143 (MQ=255)                                         gaagTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCt                                                                                                                     <  2:1413960/143‑1 (MQ=255)                                             tGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCg                                                                                                          >  1:840574/1‑150 (MQ=255)                                                aCGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCg                                                                                                       <  1:1356970/150‑1 (MQ=255)                                                     gTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGc                                                                                                                       >  1:767730/1‑129 (MQ=255)                                                     gTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGc                                                                                                                       <  2:767730/129‑1 (MQ=255)                                                      tCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTgc‑gc                                                                                                                                               >  2:861494/1‑104 (MQ=255)                                                      tCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTgc‑gc                                                                                                                                               <  1:861494/104‑1 (MQ=255)                                                      tCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACg                                                                                                 >  1:1174643/1‑150 (MQ=255)                                                                gATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATc                                                                                         <  2:646098/148‑1 (MQ=255)                                                                gATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATc                                                                                         >  1:646098/1‑148 (MQ=255)                                                                 aTCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGc‑gcg                                                                                                                                              <  2:1082061/94‑1 (MQ=255)                                                                 aTCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGc‑gcg                                                                                                                                              >  1:1082061/1‑94 (MQ=255)                                                                    gATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACAcc                                                                                   <  2:840574/150‑1 (MQ=255)                                                                     aTGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAata                                                                                           <  1:988911/141‑1 (MQ=255)                                                                     aTGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAata                                                                                           >  2:988911/1‑141 (MQ=255)                                                                      tGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCg                                                                                 >  2:1238290/1‑150 (MQ=255)                                                                           tCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGCACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACcg                                                                            >  2:560377/1‑150 (MQ=255)                                                                             cccAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACcggc                                                                          >  1:563922/1‑150 (MQ=255)                                                                                     cacCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACcggcg                                                                         >  1:1365397/1‑143 (MQ=255)                                                                                     cacCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACcggcg                                                                         <  2:1365397/143‑1 (MQ=255)                                                                                      acCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTac                                                                 >  2:1326520/1‑150 (MQ=255)                                                                                               ggCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGgcg                                                        >  2:986262/1‑150 (MQ=255)                                                                                                gCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGgcgc                                                       <  1:986262/150‑1 (MQ=255)                                                                                                          cTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAac                                                                                      <  1:1138117/109‑1 (MQ=255)                                                                                                          cTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAac                                                                                      >  2:1138117/1‑109 (MQ=255)                                                                                                               tCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTac                                                                 >  2:575078/1‑125 (MQ=255)                                                                                                               tCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTac                                                                 <  1:575078/125‑1 (MQ=255)                                                                                                               tCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAg                                                           <  2:3096/131‑1 (MQ=255)                                                                                                               tCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAg                                                           >  1:3096/1‑131 (MQ=255)                                                                                                                     cGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCa                                  <  2:1174643/150‑1 (MQ=255)                                                                                                                            ccccATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGGCTGAAAAACATCGCCGGTCAAGAACCAATCGACACGCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTCCGGCAGCGTCAACACCcg                           >  1:678481/1‑150 (MQ=255)                                                                                                                                  ggACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGt                     <  1:968252/150‑1 (MQ=255)                                                                                                                                        gtagcgtggatcgcTGGTGCCGCG‑CACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCaa                                                                     <  2:264310‑M1/82‑1 (MQ=255)                                                                                                                                        gtagcgtggatcgcTGGTGC‑CGCGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCaa                                                                     >  1:264310‑M1/15‑96 (MQ=255)                                                                                                                                         gACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAg                                                           >  2:365191/1‑105 (MQ=255)                                                                                                                                         gACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAg                                                           <  1:365191/105‑1 (MQ=255)                                                                                                                                         gACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTg              >  2:850511/1‑150 (MQ=255)                                                                                                                                           cAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCaa                                 <  2:1008398/129‑1 (MQ=255)                                                                                                                                           cAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCaa                                 >  1:1008398/1‑129 (MQ=255)                                                                                                                                             gCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCa          >  2:887537/1‑150 (MQ=255)                                                                                                                                             gCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGGCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCa          >  1:625212/1‑150 (MQ=255)                                                                                                                                               aTCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAg        >  2:132864/1‑150 (MQ=255)                                                                                                                                                tCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAgg       <  2:563922/150‑1 (MQ=255)                                                                                                                                                  tcgcTGGTGCCGCG‑CACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCaa                                                                                             >  2:1172075‑M1/5‑62 (MQ=255)                                                                                                                                                  tcgcTGGTGCCGCG‑CACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCaa                                                                                             <  1:1172075‑M1/58‑1 (MQ=255)                                                                                                                                                  gAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAGGGc     >  1:694129/1‑150 (MQ=255)                                                                                                                                                    gcTGGTGCCGCG‑CACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAGGGCAt   <  2:309048‑M1/148‑1 (MQ=255)                                                                                                                                                     gtggtgC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAGGGCATc  <  1:1238290/150‑1 (MQ=255)                                                                                                                                                     gtggcgC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAAAATCGCCGGTAACGTCAATATCAACGCACGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAGGGCATc  <  2:238177/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      CTCGGGCAAACTGTCGTTTCGCGGCTTCAATGGCGAAGGCGAAGTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAGGGCATC  >  NC_002947/3777283‑3777580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.