New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3777432 =	47 (0.890)	3 (0.060)	6/234	NT	6.2%	coding (443/2052 nt)	PP_3340	TonB‑dependent receptor
	?	NC_002947	3777447 =	46 (0.920)					coding (458/2052 nt)	PP_3340	TonB‑dependent receptor

TTCGCGGCTTCAATGGCGAAGGCGAAGTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAGGGCATCGAGACCAGC  >  NC_002947/3777300‑3777589                                                                                                                                                     |                                                                                                                                               atgcccttggccagttgcacctcgcgggtgttgaagctgccgtagcgcaggcgcgccttgttgtagttgccgccggtgcgggtgttgatattgacgttaccggcgatgttgttcaggccgtagcgtggatcgctggtgcgcggcaccaGc                                                                                                                                               <  2:309048‑M2/2‑1 (MQ=255)    gcgGCTTCAATGGCGAAGGCGAAGTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATc                                                                                                                                           >  2:968252/1‑150 (MQ=255)    gcgGCTTCAATGGCGAAGGCGAAGTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATc                                                                                                                                           >  1:719667/1‑150 (MQ=255)             aTGGCGAAGGCGAAGTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACg                                                                                                                                  >  1:560231/1‑150 (MQ=255)               ggcgaaggcgaaGTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGc                                                                                                                                <  1:618920/150‑1 (MQ=255)                       cgaagTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGaacaa                                                                                                                        <  2:719667/150‑1 (MQ=255)                        gaagTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCt                                                                                                                              <  2:1413960/143‑1 (MQ=255)                        gaagTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCt                                                                                                                              >  1:1413960/1‑143 (MQ=255)                            tGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCg                                                                                                                   >  1:840574/1‑150 (MQ=255)                               aCGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCg                                                                                                                <  1:1356970/150‑1 (MQ=255)                                    gTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGc                                                                                                                                <  2:767730/129‑1 (MQ=255)                                    gTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGc                                                                                                                                >  1:767730/1‑129 (MQ=255)                                     tCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACg                                                                                                          >  1:1174643/1‑150 (MQ=255)                                               gATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATc                                                                                                  <  2:646098/148‑1 (MQ=255)                                               gATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATc                                                                                                  >  1:646098/1‑148 (MQ=255)                                                   gATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACAcc                                                                                            <  2:840574/150‑1 (MQ=255)                                                    aTGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAata                                                                                                    >  2:988911/1‑141 (MQ=255)                                                    aTGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAata                                                                                                    <  1:988911/141‑1 (MQ=255)                                                     tGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCg                                                                                          >  2:1238290/1‑150 (MQ=255)                                                          tCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGCACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACcg                                                                                     >  2:560377/1‑150 (MQ=255)                                                            cccAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACcggc                                                                                   >  1:563922/1‑150 (MQ=255)                                                                   ttgccgccggtgcgggtgttgatattgacgttaccggcgatgttgttcaggccgtagcgtggatcgctggtgcgcggcaccaGCGATCCACGCTAc                                                                                                                                   <  2:264310‑M2/14‑1 (MQ=255)                                                                   ttgccgccggtgcgggtgttgatattgacgttaccggcgatgttgttcaggccgtagcgtggatcgctggtgcgcggcaccaGCGATCCACGCTAc                                                                                                                                   >  1:264310‑M2/83‑96 (MQ=255)                                                                    cacCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACcggcg                                                                                  <  2:1365397/143‑1 (MQ=255)                                                                    cacCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACcggcg                                                                                  >  1:1365397/1‑143 (MQ=255)                                                                     acCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTac                                                                          >  2:1326520/1‑150 (MQ=255)                                                                              ggCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGgcg                                                                 >  2:986262/1‑150 (MQ=255)                                                                               gCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGgcgc                                                                <  1:986262/150‑1 (MQ=255)                                                                                         cTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAac                                                                                               <  1:1138117/109‑1 (MQ=255)                                                                                         cTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAac                                                                                               >  2:1138117/1‑109 (MQ=255)                                                                                           ttgacgttaccggcgatgttgttcaggccgtagcgtggatcgctggtgcgcggcaccaGCGa                                                                                                                                             >  2:1172075‑M2/59‑62 (MQ=255)                                                                                           ttgacgttaccggcgatgttgttcaggccgtagcgtggatcgctggtgcgcggcaccaGCGa                                                                                                                                             <  1:1172075‑M2/4‑1 (MQ=255)                                                                                              tCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTac                                                                          >  2:575078/1‑125 (MQ=255)                                                                                              tCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTac                                                                          <  1:575078/125‑1 (MQ=255)                                                                                              tCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAg                                                                    >  1:3096/1‑131 (MQ=255)                                                                                              tCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAg                                                                    <  2:3096/131‑1 (MQ=255)                                                                                                    cGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCa                                           <  2:1174643/150‑1 (MQ=255)                                                                                                           ccccATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGGCTGAAAAACATCGCCGGTCAAGAACCAATCGACACGCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTCCGGCAGCGTCAACACCcg                                    >  1:678481/1‑150 (MQ=255)                                                                                                                 ggACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGt                              <  1:968252/150‑1 (MQ=255)                                                                                                                       gtagcgtggatcgcTGGTGCCGCG‑CACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCaa                                                                              <  2:264310‑M1/82‑1 (MQ=255)                                                                                                                       gtagcgtggatcgcTGGTGC‑CGCGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCaa                                                                              >  1:264310‑M1/15‑96 (MQ=255)                                                                                                                        gACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAg                                                                    <  1:365191/105‑1 (MQ=255)                                                                                                                        gACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAg                                                                    >  2:365191/1‑105 (MQ=255)                                                                                                                        gACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTg                       >  2:850511/1‑150 (MQ=255)                                                                                                                          cAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCaa                                          >  1:1008398/1‑129 (MQ=255)                                                                                                                          cAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCaa                                          <  2:1008398/129‑1 (MQ=255)                                                                                                                            gCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCa                   >  2:887537/1‑150 (MQ=255)                                                                                                                            gCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGGCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCa                   >  1:625212/1‑150 (MQ=255)                                                                                                                              aTCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAg                 >  2:132864/1‑150 (MQ=255)                                                                                                                               tCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAgg                <  2:563922/150‑1 (MQ=255)                                                                                                                                 tcgcTGGTGCCGCG‑CACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCaa                                                                                                      <  1:1172075‑M1/58‑1 (MQ=255)                                                                                                                                 tcgcTGGTGCCGCG‑CACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCaa                                                                                                      >  2:1172075‑M1/5‑62 (MQ=255)                                                                                                                                 gAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAGGGc              >  1:694129/1‑150 (MQ=255)                                                                                                                                   gcTGGTGCCGCG‑CACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAGGGCAt            <  2:309048‑M1/148‑1 (MQ=255)                                                                                                                                    gtggtgC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAGGGCATc           <  1:1238290/150‑1 (MQ=255)                                                                                                                                    gtggcgC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAAAATCGCCGGTAACGTCAATATCAACGCACGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAGGGCATc           <  2:238177/150‑1 (MQ=255)                                                                                                                                         tgccgcgcaccaGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAGGGCATCgaga       <  1:309048‑M2/138‑1 (MQ=255)                                                                                                                                         GC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAGGGCATCGAGAc      >  2:678481‑M1/1‑150 (MQ=255)                                                                                                                                            gcgGCACGAGCGATCCCCGCTACGACCTCAACCACATCGCCGGTAACGTCAATATCGACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACTCCCGCGAGGTGCAACTGGCCAAGGGCATCGAGTCCa    <  2:560231/150‑1 (MQ=255)                                                                                                                                              ggCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAGGGCATCGAGACCAGc  <  2:694129/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               TTCGCGGCTTCAATGGCGAAGGCGAAGTGAACGCGGTCAAGTTGCTGATCGATGGCATCCCCAGCAACACCAATGACGGCAACATGCCCTTCATCGACTCGGTGTTCCCCATGGACATCGACAGCATCGAAGTGGTGC‑GCGGCACCAGCGATCCACGCTACGGCCTGAACAACATCGCCGGTAACGTCAATATCAACACCCGCACCGGCGGCAACTACAACAAGGCGCGCCTGCGCTACGGCAGCTTCAACACCCGCGAGGTGCAACTGGCCAAGGGCATCGAGACCAGC  >  NC_002947/3777300‑3777589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.