New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3807585 =	46 (0.880)	3 (0.060)	3/236	NT	7.3%	coding (2158/2544 nt)	PP_3364	two‑component system response regulator
	?	NC_002947	3807621 =	32 (0.630)					coding (2194/2544 nt)	PP_3364	two‑component system response regulator

ATCGACCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTCCGAGGACCAAGCCATG  >  NC_002947/3807441‑3807734                                                                                                                                                 |                                                                                                                                                      aTCGACCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTGCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGt                                                                                                                                                  <  1:1170671/150‑1 (MQ=255)       cGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAAc                                                                                                                                            >  1:713161/1‑150 (MQ=255)       cGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAAc                                                                                                                                            >  1:384156/1‑150 (MQ=255)        gcagcaTCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACg                                                                                                                                           >  1:576897/1‑150 (MQ=255)              tCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGt                                                                                                                                     <  2:677117/150‑1 (MQ=255)               cccGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGGTGGATGAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGtt                                                                                                                                    >  2:1229189/1‑150 (MQ=255)               cccGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGtt                                                                                                                                    <  1:642953/150‑1 (MQ=255)                ccGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGttt                                                                                                                                   <  1:1240013/150‑1 (MQ=255)                ccGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGttt                                                                                                                                   >  2:747252/1‑150 (MQ=255)                  gTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGc                                                                                                                                 >  1:1111487/1‑150 (MQ=255)                   ttCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCa                                                                                                                                <  2:713161/150‑1 (MQ=255)                   ttCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCa                                                                                                                                <  2:576897/150‑1 (MQ=255)                   ttCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCa                                                                                                                                <  2:384156/150‑1 (MQ=255)                   ttCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCa                                                                                                                                <  1:1229189/150‑1 (MQ=255)                         cTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCCAGGCGTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAgcgcgc                                                                                                                          >  1:549586/1‑150 (MQ=255)                                  aCCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGccc                                                                                                                                                    <  1:1009880/115‑1 (MQ=255)                                  aCCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGccc                                                                                                                                                    >  2:1009880/1‑115 (MQ=255)                                  aCCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAAc                                                                                                                                            <  2:543263/123‑1 (MQ=255)                                  aCCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAAc                                                                                                                                            >  1:543263/1‑123 (MQ=255)                                   gcttggtcctcggagctggcggtgatcacgtccttgatttgcgcatcgttgagaatttgctccaggcctaccgcaatcaccagttgatcctcgagtatcagcacacacaaGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTtgt                                                                                                                >  2:934686‑M1/111‑150 (MQ=255)                                   ccAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTtgt                                                                                                                <  1:659490/150‑1 (MQ=255)                                     ttggtcctcggagctggcggtgatcacgtccttgatttgcgcatcgttgagaatttgctccaggcctaccgcaatcaccagttgatcctcgagtatcagcacacacaaGccc                                                                                                                                                    <  1:866514‑M1/4‑1 (MQ=255)                                     ttggtcctcggagctggcggtgatcacgtccttgatttgcgcatcgttgagaatttgctccaggcctaccgcaatcaccagttgatcctcgagtatcagcacacacaaGccc                                                                                                                                                    >  2:866514‑M1/109‑112 (MQ=255)                                     aGCGCGGTGGAATATCACCCCGAATGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTtgtgt                                                                                                              <  2:960310/150‑1 (MQ=255)                                     aGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTtgtgt                                                                                                              <  2:100858/150‑1 (MQ=255)                                         cgGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGc                                                                                                          <  1:747252/150‑1 (MQ=255)                                                 tatCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTc                                                                                                  >  1:445801/1‑150 (MQ=255)                                                 gctggcggtgatcacgtccttgatttgcgcatcgttgagaatttgctccaggcctaccgcaatcaccagttgatcctcgagtatcagcacacacaaGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCg                                                                                                                       <  1:1111721‑M1/33‑1 (MQ=255)                                                 gctggcggtgatcacgtccttgatttgcgcatcgttgagaatttgctccaggcctaccgcaatcaccagttgatcctcgagtatcagcacacacaaGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCg                                                                                                                       >  2:1111721‑M1/97‑129 (MQ=255)                                                               ccTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACCGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGGTCAACttgg                                                                                    >  2:613183/1‑147 (MQ=255)                                                                cTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTg                                                                                   >  2:457039/1‑150 (MQ=255)                                                                 tGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGa                                                                                  <  2:445801/150‑1 (MQ=255)                                                                 ggCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGa                                                                                  <  1:414800/149‑1 (MQ=255)                                                                  gCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGAt                                                                                 >  2:898111/1‑150 (MQ=255)                                                                      ggCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGc                                                                                                                                                <  2:492177/83‑1 (MQ=255)                                                                      ggCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGc                                                                                                                                                >  1:492177/1‑83 (MQ=255)                                                                               aGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTg                                                                    <  2:1111487/150‑1 (MQ=255)                                                                                 aaTCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGa                                                                  <  1:1180083/150‑1 (MQ=255)                                                                                   tCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTtgt                                                                                                                >  1:309672/1‑102 (MQ=255)                                                                                   tCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTtgt                                                                                                                <  2:309672/102‑1 (MQ=255)                                                                                      cGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGc                                                                                                          >  2:263720/1‑105 (MQ=255)                                                                                      cGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGc                                                                                                          <  1:263720/105‑1 (MQ=255)                                                                                      cGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATAc                                                                                                    <  2:608834/111‑1 (MQ=255)                                                                                      cGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATAc                                                                                                    >  1:608834/1‑111 (MQ=255)                                                                                           aaGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATtctc                                                        >  1:763246/1‑150 (MQ=255)                                                                                            aGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCa                                                       <  1:457039/150‑1 (MQ=255)                                                                                                 cTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGAt                                                  <  1:613183/150‑1 (MQ=255)                                                                                                               aGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGa                                    <  1:898111/150‑1 (MQ=255)                                                                                                                     aGAAACCGCTCTCCCGGCCACACAGCTGGCCCGCGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGAt                              >  2:127991/1‑150 (MQ=255)                                                                                                                      gAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATc                             <  1:70183/150‑1 (MQ=255)                                                                                                                                tcCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCt                   >  2:67060/1‑150 (MQ=255)                                                                                                                                  ccGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTcc                 >  1:1175834/1‑150 (MQ=255)                                                                                                                                     gCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATTAAGGACGTGATCACCGCCAGCTCCGAg              <  1:261234/150‑1 (MQ=255)                                                                                                                                               tGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTgg                                                                                     >  2:1019527/1‑69 (MQ=255)                                                                                                                                               tGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTgg                                                                                     <  1:1019527/69‑1 (MQ=255)                                                                                                                                               tGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAAc                                                     <  2:46184/101‑1 (MQ=255)                                                                                                                                               tGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAAc                                                     >  1:46184/1‑101 (MQ=255)                                                                                                                                                 GCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTCCGAGGACCAAGCCATg  <  2:681727‑M1/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                      ATCGACCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTCCGAGGACCAAGCCATG  >  NC_002947/3807441‑3807734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.