New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4278745 | 39 (0.740) | 6 (0.120) | 6/232 | NT | 13.4% | coding (331/339 nt) | PP_3749 | hypothetical protein |
? | NC_002947 | = 4278751 | 41 (0.830) | coding (337/339 nt) | PP_3749 | hypothetical protein |
GGCGGGCCATTTCAGAGCATATGAAAGCTTCGACGGTTGAAGGCGTGCGCATCAAGCGCAACCGCAACGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGC > NC_002947/4278608‑4278893 | ggcgggcCATTTCAGAGCATATGAAAGCTTCGACGGTTGAAGGCGTGCGCATCAAGCGCAACCGCAACGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTgagcgg > 2:768137‑M2/1‑144 (MQ=255) ccATTTCAGAGCATATGAAAGCTTCGACGGTTGAAGGCGTGCGCATCAAGCGCAACCGCAACGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCt > 2:468236/1‑150 (MQ=255) cATTTCAGAGCATATGAAAGCTTCGACGGTTGAAGGCGTGCGCATCAAGCGCAACCGCAACGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCAGAGCCgagcggtgctgac < 1:1419971‑M2/150‑14 (MQ=255) cAGAGCATATGAAAGCTTCGACGGTTGAAGGCGTGCGCATCAAGCGCAACCGCAACGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCAGAGCCgagcggtgctgacggtga > 2:1419971‑M2/1‑132 (MQ=255) cATATGAAAGCTTCGACGGTTGAAGGCGTGCGCATCAAGCGCAACCGCAACGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCAGAGCCgagcggtgctgacggtgatatag < 2:1360267‑M2/150‑24 (MQ=255) tGAAAGCTTCGACGGTTGAAGGCGTGCGCATCAAGCGCAACCGCAACGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGc > 1:611277/1‑150 (MQ=255) gAAAGCTTCGACGGTTGAAGGCGTGCGCATCAAGCGCAACCGCAACGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGcc > 1:903813/1‑150 (MQ=255) aaaGCTTCGACGGTTGAAGGCGTGCGCATCAAGCGCAACCGCAACGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCt < 1:452345/150‑1 (MQ=255) aGCTTCGACGGTTGAAGGCGTGCGCATCAAGCGCAACCGCAACGCGCCGGAAGTCGATACCGTGAGACGCATTGCAATGGAAGAAAACGGCTATATGGCCGGCGTCAGTGGTTGCGTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCtgt < 1:739117/150‑1 (MQ=255) cGACGGTTGAAGGCGTGCGCATCAAGCGCAACCGCAACGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCAGAGCCgagcggtgctgacggtgatatagcctttttctgcca > 1:1360267‑M2/1‑114 (MQ=255) aCGGTTGAAGGCGTGCGCATCAAGCGCAACCGCAACGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGc < 2:611277/150‑1 (MQ=255) ttGAAGGCGTGCGCATCAAGCGCAACCGCAACGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCt < 2:107205/150‑1 (MQ=255) gAAGGCGTGCGCATCAAGCGCAACCACACCGCGGCTCTTCCGGTATCCTTGATACGCATTGCCCTGGCAGAACAATGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGa < 1:1385041/150‑1 (MQ=255) gTGCGCATCAAGCGCAACCGCAACGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCa < 1:468236/150‑1 (MQ=255) aaccgcaacGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTc > 1:849683/1‑98 (MQ=255) aaccgcaacGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTc < 2:849683/98‑1 (MQ=255) aaccgcaacGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAg > 1:443411/1‑130 (MQ=255) aaccgcaacGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAg < 2:443411/130‑1 (MQ=255) cgcaacGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGa < 2:1250289/150‑1 (MQ=255) cgcaacGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGa < 2:231289/150‑1 (MQ=255) gACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCAGAGCCgagcggtgctgacgg < 1:1348525‑M2/82‑16 (MQ=255) gACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCAGAGCCgagcggtgctgacgg > 2:1348525‑M2/1‑67 (MQ=255) aCGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTTGGCCGCTGTGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCcttcgctccg > 1:798519/1‑150 (MQ=255) cGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCgg > 1:478965/1‑150 (MQ=255) gAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGc < 1:672166/80‑1 (MQ=255) gAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGc > 2:672166/1‑80 (MQ=255) gATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCa < 1:1276882/150‑1 (MQ=255) aCGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATgg > 2:1263510/1‑150 (MQ=255) aTTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACt > 2:425861/1‑150 (MQ=255) aTTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACt < 2:1359868/150‑1 (MQ=255) cccTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGcac > 1:765650/1‑150 (MQ=255) tGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCggctctgagcggtgctgacggtgatatagcctttttctgccagggcaatgcgtatcacggtttcgtcttccggcgcgttgcggttgcgcttgatgcgcacgccttcaaccgtcg > 1:1360267‑M1/1‑36 (MQ=255) gCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCg > 1:553085/1‑150 (MQ=255) aaaaaGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTg < 2:1207022/150‑1 (MQ=255) gCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGc > 2:505779/1‑150 (MQ=255) gCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGc > 2:295228/1‑150 (MQ=255) gCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGc > 1:438268/1‑150 (MQ=255) cTATATCACCGTCAGCACCGCTCggctctgagcggtgctgacggtgatatagcctttttctgccagggcaatgcgtatcacggtttcgtcttccggcgcgttgcggttgcgcttgatgcgcacgccttcaaccgtcgaagctttcatatg < 2:1360267‑M1/150‑128 (MQ=255) cTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGcc > 2:826526/1‑150 (MQ=255) tataTCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCg > 1:918518/1‑150 (MQ=255) tCACCGTCAGCACCGCTCggctctgagcggtgctgacggtgatatagcctttttctgccagggcaatgcgtatcacggtttcgtcttccggcgcgttgcggttgcgcttgatgcgcacgccttcaaccgtcgaagctttcatatgctctg > 2:1419971‑M1/1‑18 (MQ=255) tCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCaaa > 1:96258/1‑150 (MQ=255) tCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCaaa < 1:425861/150‑1 (MQ=255) ccGTCAGCACCGCTCggctctgagcggtgctgacggtgatatagcctttttctgccagggcaatgcgtatcacggtttcgtc > 2:1348525‑M1/1‑15 (MQ=255) ccGTCAGCACCGCTCggctctgagcggtgctgacggtgatatagcctttttctgccagggcaatgcgtatcacggtttcgtc < 1:1348525‑M1/82‑68 (MQ=255) ccGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGc < 1:295228/150‑1 (MQ=255) cGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGcc > 1:1218459/1‑150 (MQ=255) gTCAGCACCGCTCggctctgagcggtgctgacggtgatatagcctttttctgccagggcaatgcgtatcacggtttcgtcttccggcgcgttgcggttgcgcttgatgcgcacgccttcaaccgtcgaagctttcatatgctctgaaatg < 1:1419971‑M1/150‑138 (MQ=255) tCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCTCCTGGAGGGCCGCAAAGGCCTg > 1:705793/1‑150 (MQ=255) gCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGcc > 2:998337/1‑150 (MQ=255) aCCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGa > 2:1165752/1‑150 (MQ=255) aCCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAACCTGTGACAAGCAGCTGAGTCGCAGCCAATCCGCTATCCTGGCGAAGCTTCGGCTCCTGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGa > 1:1390857/1‑150 (MQ=255) ccGCTCagagccgagcggtgctgacggtgatatagcctttttctgccagggcaatgcgtatcacggtttcgtcttccggcgcgttgcggttgcgcttgatgcgcacgccttcaaccgtcgaagctttcatatgctctgaaatggcccgcc > 2:768137‑M1/1‑6 (MQ=255) tCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGc < 1:826526/150‑1 (MQ=255) | GGCGGGCCATTTCAGAGCATATGAAAGCTTCGACGGTTGAAGGCGTGCGCATCAAGCGCAACCGCAACGCGCCGGAAGACGAAACCGTGATACGCATTGCCCTGGCAGAAAAAGGCTATATCACCGTCAGCACCGCTCGGCTCTGAGCGGTTGGCTCGGCCTCTTGGTAGCCTGTGACAAGCACCTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGC > NC_002947/4278608‑4278893 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |