New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4537557 =NA (NA)10 (0.200) 8/240 NT 91.1% coding (848/1533 nt) PP_4025 transposase
?NC_002947 4537590 = 1 (0.020)coding (881/1533 nt) PP_4025 transposase

GCTCAAAGAGCCGGATCGTGATCCGACCAGTCAATCCTGGATGTGGGTGCAGGCCAGTGGCCCGCCTGATCGACAAGTCGTGCTGTTCGATTACACCACCAGCCGCGCGCAGGAGGTGCCGCTGCGCCTGCTGGAGGGCTATCGCGGTTA  >  NC_002947/4537459‑4537608
                                                                                                  |                                                   
gcccAAAGAGTCGCATCGTGATCCCTCCAGTCAATCCTGCATGTGGGTGCAGGCCAGTGGCCCGCCTGATCGACAAGTCGTGCTCCTCGCTTACACCACCAGCCGCGCGCAGGATGTGCCGCTGCGCCTGCTGGAGGGCTATCGCGGTTa  <  1:158285/147‑1 (MQ=1)
                                                                                                  |                                                   
GCTCAAAGAGCCGGATCGTGATCCGACCAGTCAATCCTGGATGTGGGTGCAGGCCAGTGGCCCGCCTGATCGACAAGTCGTGCTGTTCGATTACACCACCAGCCGCGCGCAGGAGGTGCCGCTGCGCCTGCTGGAGGGCTATCGCGGTTA  >  NC_002947/4537459‑4537608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.