| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4629929 | 52 (0.990) | 3 (0.060) | 3/228 | NT | 5.1% | coding (143/486 nt) | PP_4094 | hypothetical protein |
| ? | NC_002947 | = 4629978 | 63 (1.290) | coding (192/486 nt) | PP_4094 | hypothetical protein | |||||
ACACCATAAAACACATACTTGAGAAATTCAGCAATGACCCGAGAATTGACGTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCGATGATGATATCTCCTCATCATGGTACCTAATTTGCAAAACGTACAA > NC_002947/4629791‑4630076 | acacCATAAAACACATACTTGAGAAATTCAGCAATGACCCGAGAATTGACGTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAgttgt > 1:588281/1‑150 (MQ=255)acacCATAAAACACATACTTGAGAAAATAAGCAATGACCCGAGAATTGACGTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAgttgt > 1:38854/1‑150 (MQ=255) ccATAAAACACATACTTGAGAAATTCAGCAATGACCCGAGAATTGACGTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGtttt < 1:1289059/150‑1 (MQ=255) tAAAACACATACTTGAGAAATTCAGCAATGACCCGAGAATTGACGTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCa < 1:1187750/139‑1 (MQ=255) tAAAACACATACTTGAGAAATTCAGCAATGACCCGAGAATTGACGTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCa > 2:1187750/1‑139 (MQ=255) aaaaCACATACTTGAGAAATTCAGCAATGACCCGAGAATTGACGTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTcccc < 2:1243885/150‑1 (MQ=255) acacATACTTGAGAAATTCAGCAATGACCCGAGAATTGACGTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTCGGTTTCCCCaaa > 1:647395/1‑150 (MQ=255) ttCAGCAATGACCCGAGAATTGACGTTTTCCCTTCAGACTCACCACTCCCCATACTACCCAACTGACTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATctct < 2:1008209/150‑1 (MQ=255) aaTGACCCGAGAATTGACGTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTAcc > 2:619751/1‑150 (MQ=255) tGACCCGAGAATTGACGTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCAt < 1:1292616/150‑1 (MQ=255) ccGAGAATTGACGTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTccc < 2:231478/118‑1 (MQ=255) ccGAGAATTGACGTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTccc > 1:231478/1‑118 (MQ=255) gaATTGACGTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTAccgc > 1:254007‑M2/1‑146 (MQ=255) aaTTGACGTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTAccgcc > 1:619751‑M2/1‑145 (MQ=255) aCGTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGtagtatggtaaaagagatgctttcgttttttggggaaaacaactgggcgccgccgcaaa < 2:170217‑M1/150‑60 (MQ=255) gTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAg > 1:356780/1‑150 (MQ=255) cccTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCaa > 1:909392/1‑150 (MQ=255) ccTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAg < 1:1086208/150‑1 (MQ=255) cTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGc > 1:3059/1‑150 (MQ=255) cTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGc > 1:1207826/1‑150 (MQ=255) ttCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGCCCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAAc < 2:201575/106‑1 (MQ=255) ttCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGtagtatggtaaaagagatgctttcgttttttggggaaaacaactgggcgccgccgcaaagt > 2:1211114‑M1/1‑81 (MQ=255) ttCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGtagtatggtaaaagagatgctttcgttttttggggaaaacaactgggcgccgccgcaaagt < 1:1211114‑M1/142‑62 (MQ=255) ttCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAAc > 1:201575/1‑106 (MQ=255) ttCAGACTCACCACTACCCATACTACCCAACTGCATTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAAc > 1:1212535/1‑106 (MQ=255) ttCAGACTCACCACTACCCATACTACCCAACTGCATTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAAc < 2:1212535/106‑1 (MQ=255) cTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCaa < 2:3059/150‑1 (MQ=255) tCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAAt > 1:732220/1‑150 (MQ=255) ccacTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACa < 2:356780/150‑1 (MQ=255) acTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGtttt < 2:318117/83‑1 (MQ=255) acTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGtttt > 1:318117/1‑83 (MQ=255) cTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGACGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACagag > 2:527543/1‑150 (MQ=255) ccATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCACCGCAACAGATCAAGCAATCCAATACAGAGATAg > 2:402366/1‑150 (MQ=255) tactacCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCaaaa < 2:710855/83‑1 (MQ=255) tactacCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCaaaa > 1:710855/1‑83 (MQ=255) tacCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCa > 1:1205132/1‑150 (MQ=255) tacCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCa > 1:896755/1‑150 (MQ=255) ccAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTATCCAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTCTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAATTTGCACTc > 1:221542/1‑150 (MQ=255) ccAACTGCCTTAGCTATCCTACAGACCTCGCTGAATGCGACAGACTTTGGGGCGGCTCCCAGTTGTTTTCCCCAAAAAACAAAAGAATCTCTTTTACCATATTATCACCCCAACACATCAAGCAATCCAATATACAGATAGTTTGCACTc > 2:311623/1‑150 (MQ=255) aaCTGCCTTAGCTATCCTCCAGACCTCTCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTAccgccgcaa > 1:78245‑M2/1‑102 (MQ=255) aaCTGCCTTAGCTATCCTCCAGACCTCTCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTAccgccgcaa < 2:78245‑M2/111‑10 (MQ=255) aaCTGACTTAGCTATCCTCCAGACCACGATGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCa < 2:198182/150‑1 (MQ=255) ccTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCAtctc > 1:81145/1‑84 (MQ=255) ccTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCAtctc < 2:81145/84‑1 (MQ=255) cTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCgat < 1:1116161/150‑1 (MQ=255) gCTATCGTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCCTCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCgatgatg > 2:552223/1‑150 (MQ=255) tATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCgatgatgat > 2:846119/1‑150 (MQ=255) tcctccAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCGATGATGatat < 2:909392/150‑1 (MQ=255) tccAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCGATGATGATAtctc > 1:1394519/1‑150 (MQ=255) tccAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCGATGATGATAtctc < 2:38854/150‑1 (MQ=255) gACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCGATGATGATATCTCCtca > 1:426581/1‑150 (MQ=255) tCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCGATGATGATATCTCCTcatcat > 1:362657/1‑150 (MQ=255) gCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCGATGATGATATCTCCTCATCATgg > 1:586566/1‑150 (MQ=255) gCTGAATTCTACAAACTTTGCGGCGCCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCGATGATGATATCTCCTCATCATgg < 2:588281/150‑1 (MQ=255) gCTGAAGTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCGATGATGATATCTCCTCATCATgg < 2:221542/150‑1 (MQ=255) tACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCGATGATGATATCTCCTCATCATGGTACCTAAtt < 2:1205132/150‑1 (MQ=255) tACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCGATGATGATATCTCCTCATCATGGTACCTAAtt > 2:716246/1‑150 (MQ=255) tACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCGATGATGATATCTCCTCATCATGGTACCTAAtt < 2:1207826/150‑1 (MQ=255) aCTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTAccgccgcaaagtttgtagaattcagcgaggtctggaggatagctaaggcagttgggtagtatgggtagtggtgagtctgaa < 1:1211114‑M2/142‑82 (MQ=255) aCTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTAccgccgcaaagtttgtagaattcagcgaggtctggaggatagctaaggcagttgggtagtatgggtagtggtgagtctgaa > 2:1211114‑M2/1‑61 (MQ=255) tttGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTAccgccgcaaagtttgtagaattcagcgaggtctggaggatagctaaggcagttgggtagtatgggtagtggtgagtctgaagggaaaacgt < 2:170217‑M2/150‑92 (MQ=255) ctggcggcggcgCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAAACCAATACAGAGATAGTTTGCACTACATGGGATGAAGATATCACCTCATCATGGTACCTAATTTGCaaaa > 1:1119359/4‑150 (MQ=17) ttGCGGCGGtagtatggtaaaagagatgctttcgttttttggggaaaacaactgggcgccgccgcaaagtttgtagaattcagagaggtctggaggatagctaaggcagtt > 1:78245‑M1/1‑9 (MQ=255) ttGCGGCGGtagtatggtaaaagagatgctttcgttttttggggaaaacaactgggcgccgccgcaaagtttgtagaattcagagaggtctggaggatagctaaggcagtt < 2:78245‑M1/111‑103 (MQ=255) ggcggtagtatggtaaaagagatgctttcgttttttggggaaaacaactgggcgccgccgcaaagtttgtagaattcagcgaggtctggaggatagctaaggcagttgggtagtatgggtagtggtgagtctgaagggaaaacgtcaatt > 1:619751‑M1/1‑5 (MQ=255) gcggtagtatggtaaaagagatgctttcgttttttggggaaaacaactgggcgccgccgcaaagtttgtagaattcagcgaggtctggaggatagctaaggcagttgggtagtatgggtagtggtgagtctgaagggaaaacgtcaattc > 1:254007‑M1/1‑4 (MQ=255) cggcgCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCGATGATGATATCTCCTCATCATGGTACCTAATTTGCAAAACGTacaa > 2:1112820/1‑150 (MQ=255) | ACACCATAAAACACATACTTGAGAAATTCAGCAATGACCCGAGAATTGACGTTTTCCCTTCAGACTCACCACTACCCATACTACCCAACTGCCTTAGCTATCCTCCAGACCTCGCTGAATTCTACAAACTTTGCGGCGGCGCCCAGTTGTTTTCCCCAAAAAACGAAAGCATCTCTTTTACCATACTACCGCCGCAACAGATCAAGCAATCCAATACAGAGATAGTTTGCACTCCATGCGATGATGATATCTCCTCATCATGGTACCTAATTTGCAAAACGTACAA > NC_002947/4629791‑4630076 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |