| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5035285 | 0 (0.000) | 8 (0.150) | 6/246 | NT | 100% | coding (1277/1536 nt) | PP_4439 | transposase |
| ? | NC_002947 | = 5038211 | NA (NA) | coding (1255/1536 nt) | PP_4443 | transposase | |||||
AAATGGCGGTGCCAATCCTCAAAACACTGCATGACTGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGC‑TGACGCGCTACCTGGACGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAGAACCAGATACGGCCCTGGGCACTCGGGCGCTCGAACTGGCTGTTTGCCGGGTCGCTACGCAGTGGTAAACGGGCCGCTGCAATCATGAG > NC_002947/5035153‑5035414 | aaaTGGCGGTGCCAATCCTCAAAACACTGCATGACTGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTAGGTAGCGCGTCA‑GCGCTACCCagcgtttcaggctgtaa < 1:188342‑M1/150‑18 (MQ=255) cTGGGTAGCGC‑TGACGCGCTACCTagcgtttcaggctgtagtcgagggctttggctgtggctgatccgttgggcaccaggtcacgctgggccaacatccactcatgcagtgttttgctgatcggtaccgccagttcctgccgtattcgcc > 2:1063051‑M1/1‑24 (MQ=255) tGGGTAGCGC‑TGACGCGCTACCTagcgtttcaggctgtagtcgagggctttggctgtggctga < 1:829910‑M1/63‑41 (MQ=255) tGGGTAGCGC‑TGACGCGCTACCTagcgtttcaggctgtagtcgagggctttggctgtggctga > 2:829910‑M1/1‑23 (MQ=255) tGGGTAGCGC‑TGACGCGCTACCCagcgtttcaggctgtagtcgagggctttggctgtggctgatccgttgggcaccaggtcacgctgggccaacatccactcatgcagtgttttgctgatcggtaccgccagttcctgccgtattcgcca > 1:1297287‑M1/1‑23 (MQ=255) ggTAGCGC‑TGACGCGCTACCCagcgtttcaggctgtaatcgagggctttggctgtggctgatccgttgggcaccaggtcacgctgggccaacatccactcatgccgtgttttgctgatcggtaccgccagttcctgccgtattcgccaac > 2:986043‑M1/1‑21 (MQ=255) gTAGCGC‑TGACGCGCTACCCagcgtttcaggctgtagtcgagggctttggctgtggctgatccgttgggcaccaggtcacgctgggccaacatccactcatg > 1:117094‑M1/1‑20 (MQ=255) gTAGCGC‑TGACGCGCTACCCagcgtttcaggctgtagtcgagggctttggctgtggctgatccgttgggcaccaggtcacgctgggccaacatccactcatg < 2:117094‑M1/102‑83 (MQ=255) | AAATGGCGGTGCCAATCCTCAAAACACTGCATGACTGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGC‑TGACGCGCTACCTGGACGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAGAACCAGATACGGCCCTGGGCACTCGGGCGCTCGAACTGGCTGTTTGCCGGGTCGCTACGCAGTGGTAAACGGGCCGCTGCAATCATGAG > NC_002947/5035153‑5035414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |