| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5414380 = | 37 (0.700) | 11 (0.210) | 9/246 | NT | 26.2% | intergenic (‑163/+53) | PP_4755/gabP‑V | ferrichrome‑iron receptor/gamma‑aminobutyrate permease |
| ? | NC_002947 | 5414412 = | 25 (0.480) | intergenic (‑195/+21) | PP_4755/gabP‑V | ferrichrome‑iron receptor/gamma‑aminobutyrate permease | |||||
GGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGAATCACCCCATCGATCGCGCTGCCACCGGTTGCGCATGACCCCTCGACGTCACGATCCCCAGGAAGGAAATCACGATCGCCAGGCCCAATGTC > NC_002947/5414241‑5414523 | ggcggGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCAGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCAc < 2:273628/150‑1 (MQ=255) cgggcggaagtgagctcgacattgggcctggcgatcgccggttccttcctggggatcgtgacgtcgaggggtcatgcgcacccggtggcagcgcgatcgatggggtgattcagttcacctggctgtaagACAAAGGGCACCCATCCTCgg > 1:1143245‑M1/130‑150 (MQ=255) ggaagtgagctcgacattgggcctggcgatcgtgatttccttcctggggatcgtgacgtcgaggggtcatgcgcaaccggtggcagcgcgatcgatggggtgattcagttcacctggctgtaagGCAAAGGGCCCCCATCCTCGGGCGcc > 1:1342174‑M1/125‑150 (MQ=255) tCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCt > 2:291090/1‑150 (MQ=255) aagtgagctcgacattgggcctggcgatcgtgatttccttcctggggatcgtgacgtcgaggggtcatgcgcaaccggtggcagcgcgatcgatggggtgattcagttcacctggctgtaagACAAAGGGCACCCATCCTCGGGCGCCCt > 2:1271793‑M1/123‑150 (MQ=255) cGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAAACATGTGCTCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCttt < 1:375186/150‑1 (MQ=255) tgagctcgacattgggcctggcgatcgtgatttccttcctggggatcgtgacgtcgaggggtcatgcgcaaccggtggcagcgcgatcgatggggtgattcagttcccctggctgtaagACAAAGGGCACCCATCCTCGGGCGCCCTTTg > 2:631199‑M1/120‑150 (MQ=255) gagctcgacattgggcctggcgatcgtgatttccttcctggggatcgtgacgtcgaggggtcatgcgcaaccggtggcagcgcgatcgatggggtgattcagttcacctggctgtaagGCAAAGGGCACCCATCCTCGGGCGCCCTTTGc > 2:898052‑M1/119‑150 (MQ=255) gCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCAATTGTTAATCCAAACGCAATATAAAAAAAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGc < 2:1113981/150‑1 (MQ=255) tctACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCt < 1:907491/146‑1 (MQ=255) tctACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCt > 2:907491/1‑146 (MQ=255) ctACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGcc < 2:863837/144‑1 (MQ=255) ctACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGcc > 1:863837/1‑144 (MQ=255) tACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGc > 2:329886/1‑150 (MQ=255) gcctggcgatcgtgatttccttcctggggatcgtgacgtcgaggggtcatgcgcaaccggtggcagcgcgatcgatggggtgattcagttcacctggctgtaagACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACa < 2:1271127‑M1/38‑1 (MQ=255) gcctggcgatcgtgatttccttcctggggatcgtgacgtcgaggggtcatgcgcaaccggtggcagcgcgatcgatggggtgattcagttcacctggctgtaagACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACa > 1:1271127‑M1/105‑142 (MQ=255) gAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTTCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGTCTTACAGACAGGTGaa > 1:421880/1‑150 (MQ=255) gAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGaa < 1:291090/150‑1 (MQ=255) gaATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGAAt > 1:1297202/1‑150 (MQ=255) acacCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGc < 2:1008861/118‑1 (MQ=255) acacCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGc > 1:1008861/1‑118 (MQ=255) tCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGaa > 1:695529/1‑129 (MQ=255) tCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGaa < 2:695529/129‑1 (MQ=255) tttatttTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCAcc > 2:1227454/1‑90 (MQ=255) tttatttTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCAcc < 1:1227454/90‑1 (MQ=255) atttTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGAATCACCCCATCGATCGCGCTGcc > 1:788477/1‑150 (MQ=255) aTGAATCGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGAATCACCCCATCGATCGCGCTGCCACCGGtt > 2:219352/1‑150 (MQ=255) gcTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCttt < 2:650640/89‑1 (MQ=255) gcTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCttt > 1:650640/1‑89 (MQ=255) tcatgcgcaaccggtggcagcgcgatcgatggggtgattcagttcacctggctgtaagGCAAAGGGCACCCATCCTCGGGCGCCCTTTGc < 2:526839‑M1/32‑1 (MQ=255) tcatgcgcaaccggtggcagcgcgatcgatggggtgattcagttcacctggctgtaagGCAAAGGGCACCCATCCTCGGGCGCCCTTTGc > 1:526839‑M1/59‑90 (MQ=255) atgcgcaaccggtggcagcgcgatcgatggggtgattcagttcacctggctgtaagACAAAGGGCACCCATCCTCGGGCGCCCTTTGc < 2:635887‑M1/32‑1 (MQ=255) atgcgcaaccggtggcagcgcgatcgatggggtgattcagttcacctggctgtaagACAAAGGGCACCCATCCTCGGGCGCCCTTTGc > 1:635887‑M1/57‑88 (MQ=255) cTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGAATCACCCCATCGATCGCGCTGCCACCGGTTGCGCATGACCCCTCGACGTCACGATc > 1:1114794/1‑150 (MQ=255) ccTGTTAATCCAAATGCTCGCTCAAACCAAAAAACAAAGGGCCCACATCCTCGGGCGATTATTTCTTTACAGCCAGGTGAACTGAATCACCCCATCGATCGCGCTGCCACCGGTTGCGCATGACCCCTCGACGTCACGATCCCCaggaag > 2:410002/1‑150 (MQ=255) cTGTTAATCCAAACGCTCTCTCAAACCAAAAACCCAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAAGTGAACTGAATCACCCCATCGATCGCGCTGCCACCGGTTGCGCATGACCCCTCGACGTCACGATCCCCaggaagg > 1:1046448/1‑150 (MQ=255) cTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCa > 1:980043/1‑74 (MQ=255) cTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCa < 2:980043/74‑1 (MQ=255) gTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGgc > 1:764050/1‑53 (MQ=255) gTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGgc < 2:764050/53‑1 (MQ=255) ccAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGAATCACCCCATCGATCGCGCTGCCACCGGTTGCGCATGACCCCTCGACGTCACGATCCCCAGGAAGGAAATCACg > 1:209273/1‑150 (MQ=255) aaaCGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGAATCACCCCATCGATCGCGCTGCCACCGGTTGCGCATGACCCCTCGACGTCACGATCCCCAGGAAGGAAATCACGAt < 1:329886/150‑1 (MQ=255) aaaCCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGAATCACCCCATCGATCGCGCTGCCACCGGTTGCGCATGACCCCTCGACGTCACGATCCCCAGGAAGGAAATCACGATCGCCAGGCCCaa > 1:162257/1‑150 (MQ=255) aaCCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGAATCACCCCATCGATCGCGCTGCCACCGGTTg > 1:776590/1‑92 (MQ=255) aaCCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGAATCACCCCATCGATCGCGCTGCCACCGGTTg < 2:776590/92‑1 (MQ=255) aaCCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGAATCACCCCATCGATCGCGCTGCCACCGGTTGCGCATGACCCCTCGACGTCACGATCCCCAGGAAGGAAATCACGATCGCCAGGCCCAAt > 1:891753/1‑150 (MQ=255) cAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGAATCACCCCATCGATCGCGCTGCCACCGGTTGCGCATGACCCCTCGACGTCACGATCCCCAGGAAGGAAATCACGATCGCCAGGCCCAATGtt < 2:891753/150‑2 (MQ=255) cAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGAATCACCCCATCGATCGCGCTGCCACCGGTTGCGCATGACCCCTCGACGTCACGATCCCCAGGAAGGAAATCACGATCGCCAGGCCCAATGTc > 1:2959/1‑150 (MQ=255) | GGCGGGCTGGCCTGTAATCCGGCCTTCTCTACATGCCGAACGAGAATGAGAAAACACCTCATTTATTTTCAATGAATTGCGCTAGCGGGGCGGGTACCTGCGAGCACCTGTTAATCCAAACGCTCTCTCAAACCAAAAAACAAAGGGCACCCATCCTCGGGCGCCCTTTGCCTTACAGCCAGGTGAACTGAATCACCCCATCGATCGCGCTGCCACCGGTTGCGCATGACCCCTCGACGTCACGATCCCCAGGAAGGAAATCACGATCGCCAGGCCCAATGTC > NC_002947/5414241‑5414523 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |