New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5552384	31 (0.590)	3 (0.060)	3/232	NT	9.1%	coding (1565/1566 nt)	PP_4882	iron ABC transporter permease
	?	NC_002947	= 5552417	31 (0.630)					intergenic (+32/+629)	PP_4882/PP_5717	iron ABC transporter permease/hypothetical protein

GACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACT  >  NC_002947/5552235‑5552533                                                                                                                                                      |                                                                                                                                                      gACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTG                                                                                                                                                       >  2:1281578‑M1/1‑150 (MQ=255)    cGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGaaa                                                                                                                                                    >  1:1233637/1‑150 (MQ=255)       cATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCt                                                                                                                                                 <  1:491956/150‑1 (MQ=255)           accaccCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGc                                                                                                                                                  >  1:682771/1‑145 (MQ=255)           accaccCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGc                                                                                                                                                  <  2:682771/145‑1 (MQ=255)           accaccCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGcc                                                                                                                                             <  2:329002/150‑1 (MQ=255)            ccaccCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTGCGCGGCGGCGGCGCCGTATGGGGCTGTTTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGATAGCTTGccc                                                                                                                                            >  1:811044/1‑150 (MQ=255)              accCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAg                                                                                                                                          <  2:587326/150‑1 (MQ=255)               cccTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAgg                                                                                                                                         >  1:549189/1‑150 (MQ=255)                      cACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCAt                                                                                                                                  <  1:1281578/150‑1 (MQ=255)                      cACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCAt                                                                                                                                  >  2:923555/1‑150 (MQ=255)                       actgAGGTGTTGGCAAACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCGGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTATATTTGCTGAGTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCAtg                                                                                                                                 >  2:507585/4‑150 (MQ=255)                       aCCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGgccacatgg                                                                                                                                 >  1:565327/1‑144 (MQ=255)                              tgtgGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTg                                                                                                                          <  1:659921/150‑1 (MQ=255)                                  ggCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGca                                                                                                                      >  2:669755/1‑150 (MQ=255)                                  ggCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGAGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGca                                                                                                                      >  2:1328622/1‑150 (MQ=255)                                       acacaGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGtgcccaggcctcatggcggcctgggcaagctttcaagc                                                                                                                 >  1:467566‑M1/1‑112 (MQ=255)                                       acacaGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGCTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCAcaagc                                                                                                                 <  1:928932‑M2/150‑6 (MQ=255)                                             ccAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGtgcccaggcctcatggcggcctgggcaagctttcaagccttgtt                                                                                                           <  2:467566‑M1/150‑45 (MQ=255)                                                 cGTCTAGTTCGCGGCGGCCGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGTTTGCCCGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGtgcccaggccacatggcggcctgggcaagctttcaagccttgttcaaa                                                                                                       <  2:130707‑M1/150‑49 (MQ=255)                                                    cGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGa                                                                                                    <  1:348340/150‑1 (MQ=255)                                                       gTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGa                                                                                                             <  1:267598/138‑1 (MQ=255)                                                       gTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGa                                                                                                             >  2:267598/1‑138 (MQ=255)                                                        ttCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTtc                                                                                                <  1:1276692/150‑1 (MQ=255)                                                                                 cgTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACtctc                                                                       <  2:896011/150‑1 (MQ=255)                                                                                  gttgttGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCa                                                                      >  1:998110/1‑150 (MQ=255)                                                                                      ttgATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAg                                                                  >  1:199487/1‑150 (MQ=255)                                                                                                 gtCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTa                                                                                                      <  1:1136985/103‑1 (MQ=255)                                                                                                 gtCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTa                                                                                                      >  2:1136985/1‑103 (MQ=255)                                                                                                              gtgtATTTGCTGACTGCGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGt                                          >  2:1062654/1‑150 (MQ=255)                                                                                                                 tATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGt                                       <  1:669755/150‑1 (MQ=255)                                                                                                                  ttttGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTa                                      <  2:928932/149‑1 (MQ=255)                                                                                                                                 ggATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGcccc                       >  1:989661/1‑150 (MQ=255)                                                                                                                                        tttGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCAcaagccttgttcaaatacatccgcgtagtcagcaaatacacgggcaaacccgacaccacaatcaacaacgccgcatacggcgcggccgccgcgaactagacg                <  2:130707‑M2/150‑103 (MQ=255)                                                                                                                                        tttGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGAtac                                 >  1:1055122/1‑133 (MQ=255)                                                                                                                                        tttGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGAtac                                 <  2:1055122/133‑1 (MQ=255)                                                                                                                                           gAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAgg             <  1:923555/150‑1 (MQ=255)                                                                                                                                            aaCAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAggg            <  1:332526/150‑1 (MQ=255)                                                                                                                                            aaCAAGGCTTGAAAGCTTGCCCAGGCCGCCATGAGGCCTGGGCAcaagccttgttcaaatacatccgcgtagtcagcaaatacaccggcaaccccgacaccacaatcaacaacgccgcatacggcgccgccgccgcgaactcgacgttgg            <  2:467566‑M2/150‑107 (MQ=255)                                                                                                                                               aaGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGaa                                                <  1:889567/111‑1 (MQ=255)                                                                                                                                               aaGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGaa                                                >  2:889567/1‑111 (MQ=255)                                                                                                                                                  gCTTGtgcccaggccacatggcggcctgggcaagctttcaagccttgttcaaatacatccgcgtagtcagcaaatacaccggcaaccccgacaccacaatcagcaacgccgcatacggcgccgccgccgcgaactcgacgttggctgtgt      <  1:928932‑M1/150‑146 (MQ=255)                                                                                                                                                  gCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACaa      >  1:120847/1‑150 (MQ=255)                                                                                                                                                  gCTTGAAAGCTTGCCCAGGCCGCCATGAGGCCTGGGCAcaagccttgttcaaatacatccgcgtagtcagcaaatacaccggcaaccccgacaccacaatcaacaacgccgcatacggcgccgccgccgcgaactcgacgttggctgtgt      >  1:467566‑M2/1‑38 (MQ=255)                                                                                                                                                    ttGAAAACTTGCCCAGGGCGCCATGAGGGCTGGGCACAATCATGAGTGCGTAGACTTCATCACAAGAAAACTATAAAACTGTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGAGTAaaaaaa    >  2:423414/1‑150 (MQ=255)                                                                                                                                                      gAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAAct  <  1:1328622/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACT  >  NC_002947/5552235‑5552533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.