New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5552384	31 (0.590)	3 (0.060)	3/232	NT	9.1%	coding (1565/1566 nt)	PP_4882	iron ABC transporter permease
	?	NC_002947	= 5552417	31 (0.630)					intergenic (+32/+629)	PP_4882/PP_5717	iron ABC transporter permease/hypothetical protein

GGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCGAGATC  >  NC_002947/5552268‑5552565                                                                                                                                                      |                                                                                                                                                     ggCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGca                                                                                                                                                      >  2:669755/1‑150 (MQ=255) ggCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGAGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGca                                                                                                                                                      >  2:1328622/1‑150 (MQ=255)      acacaGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGCTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCAcaagc                                                                                                                                                 <  1:928932‑M2/150‑6 (MQ=255)                   cGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGa                                                                                                                                    <  1:348340/150‑1 (MQ=255)                      gTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGa                                                                                                                                             >  2:267598/1‑138 (MQ=255)                      gTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGa                                                                                                                                             <  1:267598/138‑1 (MQ=255)                       ttCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTtc                                                                                                                                <  1:1276692/150‑1 (MQ=255)                                                cgTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACtctc                                                                                                       <  2:896011/150‑1 (MQ=255)                                                 gttgttGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCa                                                                                                      >  1:998110/1‑150 (MQ=255)                                                     ttgATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAg                                                                                                  >  1:199487/1‑150 (MQ=255)                                                                gtCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTa                                                                                                                                      <  1:1136985/103‑1 (MQ=255)                                                                gtCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTa                                                                                                                                      >  2:1136985/1‑103 (MQ=255)                                                                             gtgtATTTGCTGACTGCGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGt                                                                          >  2:1062654/1‑150 (MQ=255)                                                                                tATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGt                                                                       <  1:669755/150‑1 (MQ=255)                                                                                 ttttGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTa                                                                      <  2:928932/149‑1 (MQ=255)                                                                                                ggATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGcccc                                                       >  1:989661/1‑150 (MQ=255)                                                                                                       tttGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCAcaagccttgttcaaatacatccgcgtagtcagcaaatacacgggcaaacccgacaccacaatcaacaacgccgcatacggcgcggccgccgcgaactagacg                                                <  2:130707‑M2/150‑103 (MQ=255)                                                                                                       tttGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGAtac                                                                 >  1:1055122/1‑133 (MQ=255)                                                                                                       tttGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGAtac                                                                 <  2:1055122/133‑1 (MQ=255)                                                                                                          gAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAgg                                             <  1:923555/150‑1 (MQ=255)                                                                                                           aaCAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAggg                                            <  1:332526/150‑1 (MQ=255)                                                                                                           aaCAAGGCTTGAAAGCTTGCCCAGGCCGCCATGAGGCCTGGGCAcaagccttgttcaaatacatccgcgtagtcagcaaatacaccggcaaccccgacaccacaatcaacaacgccgcatacggcgccgccgccgcgaactcgacgttgg                                            <  2:467566‑M2/150‑107 (MQ=255)                                                                                                              aaGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGaa                                                                                <  1:889567/111‑1 (MQ=255)                                                                                                              aaGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGaa                                                                                >  2:889567/1‑111 (MQ=255)                                                                                                                 gCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACaa                                      >  1:120847/1‑150 (MQ=255)                                                                                                                 gCTTGAAAGCTTGCCCAGGCCGCCATGAGGCCTGGGCAcaagccttgttcaaatacatccgcgtagtcagcaaatacaccggcaaccccgacaccacaatcaacaacgccgcatacggcgccgccgccgcgaactcgacgttggctgtgt                                      >  1:467566‑M2/1‑38 (MQ=255)                                                                                                                   ttGAAAACTTGCCCAGGGCGCCATGAGGGCTGGGCACAATCATGAGTGCGTAGACTTCATCACAAGAAAACTATAAAACTGTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGAGTAaaaaaa                                    >  2:423414/1‑150 (MQ=255)                                                                                                                     gAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAAct                                  <  1:1328622/150‑1 (MQ=255)                                                                                                                           ttGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTc                            <  2:199487/150‑1 (MQ=255)                                                                                                                              cccAGGCTGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCNTAGGTANGACAAGCCCCACNCAAGAGGGTAACAAAACTCTTTTCATa                         <  1:1062654/150‑1 (MQ=255)                                                                                                                                cAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGt                                                                       <  2:1397374/102‑1 (MQ=255)                                                                                                                                cAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGt                                                                       >  1:1397374/1‑102 (MQ=255)                                                                                                                                 aGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGc                                                                                                 >  1:1077591/1‑75 (MQ=255)                                                                                                                                 aGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGc                                                                                                 <  2:1077591/75‑1 (MQ=255)                                                                                                                                 aGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGAc                      >  2:1110369/1‑150 (MQ=255)                                                                                                                                         aTGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTaaaa                                                                                                            >  1:1293044/1‑56 (MQ=255)                                                                                                                                         aTGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTaaaa                                                                                                            <  2:1293044/56‑1 (MQ=255)                                                                                                                                               ccTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTc        <  1:1110369/150‑1 (MQ=255)                                                                                                                                               ccTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTc        <  2:811044/150‑1 (MQ=255)                                                                                                                                                    gCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCGAGAt   <  1:1405529/150‑1 (MQ=255)                                                                                                                                                     cacaAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCGAGATc  >  2:337598/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCGAGATC  >  NC_002947/5552268‑5552565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.