New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 6044644 | 46 (0.880) | 3 (0.060) | 3/238 | NT | 6.5% | coding (702/1608 nt) | PP_5297 | amino acid transporter |
? | NC_002947 | = 6044676 | 42 (0.830) | coding (670/1608 nt) | PP_5297 | amino acid transporter |
CCCGGCACCTCTTCGCTGCCCACCGACTCTTCACTGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGCCAGGCCAATGAACACGCA > NC_002947/6044495‑6044793 | cccGGCACCTCTTCGCTGCCCACCGACTCTTCACTGACTGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCC > 2:460670‑M1/1‑150 (MQ=255) ccGGCACCTCTTCGCTGCCCACCGACTCTTCACTGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCa > 2:1351428/1‑150 (MQ=255) gccgtagcACCGACTCTTCACTGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGgcggcg > 2:501027/8‑150 (MQ=255) tGCCCACCGACTCTTCACTGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCgg > 2:933595/1‑150 (MQ=255) tGCCCACCGACTCTTCACTGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCgg > 1:1368310/1‑150 (MQ=255) gCCCACCGACTCTTCACTGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGt < 1:1183607/150‑1 (MQ=255) ccACCGACTCTTCACTGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGt < 1:135959/137‑1 (MQ=255) ccACCGACTCTTCACTGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGt > 2:135959/1‑137 (MQ=255) cACCGACTCTTCACTGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCACCGGTGGCGGCGCGGTAGt > 1:1264424/1‑150 (MQ=255) cttGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAgc > 2:1333787/3‑150 (MQ=255) tGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCgctttcggcggcactaccgcgccgccaccgctgg < 2:188659‑M1/150‑35 (MQ=255) tGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCgg < 2:823099‑M2/150‑3 (MQ=255) gACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCggc > 1:1187561‑M2/1‑147 (MQ=255) ggTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaa > 1:29621/1‑150 (MQ=255) gTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaaa > 2:665586/1‑150 (MQ=255) gTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaaa < 1:501027/150‑1 (MQ=255) aGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaaagca > 1:609323/1‑150 (MQ=255) aaGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaaagcaaagc > 1:963111/1‑150 (MQ=255) aGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGcc < 2:282029/150‑1 (MQ=255) tCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCGGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaaagcgaa < 1:68039/143‑1 (MQ=255) tCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCGGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaaagcgaa > 2:68039/1‑143 (MQ=255) ccAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCaa > 1:655626/1‑150 (MQ=255) cAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAAc < 2:914315/150‑1 (MQ=255) cAGAAGATAAAGATCGACAATGACAGGCCAGCGCCACAGGCCGAGAACGGCTCGAAACAGCACGGGTTAAAGCAGGAGAGATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCAGAGAAAGCAAAGCCGAGCAGCACCGAc > 2:662394/1‑150 (MQ=255) aagatCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAgg < 2:1368310/150‑1 (MQ=255) gatCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGc > 1:204332/1‑150 (MQ=255) atCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGAGTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGAcc > 2:819717/1‑150 (MQ=255) tCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGcca > 1:1229412/1‑150 (MQ=255) aaTGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGCAACGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAg < 1:460670/150‑1 (MQ=255) gACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCgctttcggcggcactaccgcgccgccaccgctggcgttcga < 1:1261172‑M1/110‑42 (MQ=255) gACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCgctttcggcggcactaccgcgccgccaccgctggcgttcga > 2:1261172‑M1/1‑69 (MQ=255) gACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCg > 2:430846/1‑150 (MQ=255) aGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTAc < 1:823099/150‑1 (MQ=255) gCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGa < 1:1235601/106‑1 (MQ=255) gCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGa > 2:1235601/1‑106 (MQ=255) ccGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTgtgg < 1:933595/150‑1 (MQ=255) gACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGtggtgg > 2:882295/1‑145 (MQ=255) gACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGtggtgg < 1:882295/145‑1 (MQ=255) gACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATa > 1:742983/1‑150 (MQ=255) acCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGAca > 1:1266923/1‑150 (MQ=255) cGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGAcagc > 2:483262/1‑150 (MQ=255) gAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAACGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGAcagca < 2:1229412/150‑1 (MQ=255) gAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGAcagca > 1:922304/1‑150 (MQ=255) aaCGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGACCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGAcagcag < 1:819717/150‑1 (MQ=255) gTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATc < 2:245648/148‑1 (MQ=255) gTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATc > 1:245648/1‑148 (MQ=255) gTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCca < 1:665586/150‑1 (MQ=255) cAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaaa > 1:779970/1‑57 (MQ=255) cAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaaa < 2:779970/57‑1 (MQ=255) cAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGcc > 2:70104/1‑150 (MQ=255) cAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCAGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGcc > 1:1358139/1‑150 (MQ=255) gCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGCCacg < 2:204332/150‑3 (MQ=255) aaTCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCTACGCCCCGAAAGGAGATCCACACTGCCAGGCCaa < 2:655626/150‑1 (MQ=255) tCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCggcgttcgatttcgcctggttcaacccgttcggtgtcgagtcgttctcggcctttgccgctggcctgtc < 1:1261172‑M2/110‑70 (MQ=255) tCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCggcgttcgatttcgcctggttcaacccgttcggtgtcgagtcgttctcggcctttgccgctggcctgtc > 2:1261172‑M2/1‑41 (MQ=255) cGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGCCAGGCCAATGAacac < 1:483262/150‑1 (MQ=255) gccgctttcggcggcactaccgcgccgccaccgctggcgttcgatttcgcctggttcaacccgttcggtgtcgagtcgttctcggcctttgccgctggcctgtcattgtcgatcttcatcttctggggctgggacacttgtctgaccgtc > 1:1187561‑M1/1‑3 (MQ=255) ccgctttcggcggcactaccgcgccgccaccgctggcgttcgatttcgcctggttcaacccgttcggtgtcgagtcgttctcggcctttgccgctggcctgtcattgtcgatcttcatcttctggggctgggacacttgtctgaccgtca < 2:823099‑M1/150‑149 (MQ=255) ccAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCggcgttcgatttcgcctggttcaacccgttcggtgtcgagtcgttctcggcctttgccgctggcctgtcattgtcgatcttcatcttctggggctgggacacttgtctgaccgtca < 2:188659‑M2/150‑117 (MQ=255) cAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATcc < 2:622007/125‑1 (MQ=255) cAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATcc > 1:622007/1‑125 (MQ=255) cAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACACCAGATCCACACTGCCAGGCCACTGAACACGCa > 2:119079/1‑150 (MQ=255) | CCCGGCACCTCTTCGCTGCCCACCGACTCTTCACTGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGCCAGGCCAATGAACACGCA > NC_002947/6044495‑6044793 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |