New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6044644	46 (0.880)	3 (0.060)	3/238	NT	6.5%	coding (702/1608 nt)	PP_5297	amino acid transporter
	?	NC_002947	= 6044676	42 (0.830)					coding (670/1608 nt)	PP_5297	amino acid transporter

ACTGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGCCAGGCCAATGAACACGCAACAGGTAACGATGTTGATCAACAGGTTGT  >  NC_002947/6044527‑6044822                                                                                                                                                      |                                                                                                                                                   cttGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAgc                                                                                                                                                    >  2:1333787/3‑150 (MQ=255)   tGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCgg                                                                                                                                                  <  2:823099‑M2/150‑3 (MQ=255)    gACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCggc                                                                                                                                                 >  1:1187561‑M2/1‑147 (MQ=255)       ggTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaa                                                                                                                                              >  1:29621/1‑150 (MQ=255)        gTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaaa                                                                                                                                             <  1:501027/150‑1 (MQ=255)        gTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaaa                                                                                                                                             >  2:665586/1‑150 (MQ=255)           aGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaaagca                                                                                                                                          >  1:609323/1‑150 (MQ=255)               aaGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaaagcaaagc                                                                                                                                      >  1:963111/1‑150 (MQ=255)                aGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGcc                                                                                                                                     <  2:282029/150‑1 (MQ=255)                    tCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCGGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaaagcgaa                                                                                                                                        <  1:68039/143‑1 (MQ=255)                    tCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCGGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaaagcgaa                                                                                                                                        >  2:68039/1‑143 (MQ=255)                            ccAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCaa                                                                                                                         >  1:655626/1‑150 (MQ=255)                             cAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAAc                                                                                                                        <  2:914315/150‑1 (MQ=255)                             cAGAAGATAAAGATCGACAATGACAGGCCAGCGCCACAGGCCGAGAACGGCTCGAAACAGCACGGGTTAAAGCAGGAGAGATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCAGAGAAAGCAAAGCCGAGCAGCACCGAc                                                                                                                        >  2:662394/1‑150 (MQ=255)                                      aagatCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAgg                                                                                                               <  2:1368310/150‑1 (MQ=255)                                        gatCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGc                                                                                                             >  1:204332/1‑150 (MQ=255)                                         atCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGAGTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGAcc                                                                                                            >  2:819717/1‑150 (MQ=255)                                          tCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGcca                                                                                                           >  1:1229412/1‑150 (MQ=255)                                               aaTGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGCAACGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAg                                                                                                      <  1:460670/150‑1 (MQ=255)                                                  gACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCg                                                                                                   >  2:430846/1‑150 (MQ=255)                                                     aGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTAc                                                                                                <  1:823099/150‑1 (MQ=255)                                                              gCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGa                                                                                                                                   <  1:1235601/106‑1 (MQ=255)                                                              gCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGa                                                                                                                                   >  2:1235601/1‑106 (MQ=255)                                                                     ccGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTgtgg                                                                                <  1:933595/150‑1 (MQ=255)                                                                             gACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGtggtgg                                                                             >  2:882295/1‑145 (MQ=255)                                                                             gACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGtggtgg                                                                             <  1:882295/145‑1 (MQ=255)                                                                             gACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATa                                                                        >  1:742983/1‑150 (MQ=255)                                                                                     acCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGAca                                                                >  1:1266923/1‑150 (MQ=255)                                                                                       cGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGAcagc                                                              >  2:483262/1‑150 (MQ=255)                                                                                        gAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAACGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGAcagca                                                             <  2:1229412/150‑1 (MQ=255)                                                                                        gAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGAcagca                                                             >  1:922304/1‑150 (MQ=255)                                                                                         aaCGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGACCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGAcagcag                                                            <  1:819717/150‑1 (MQ=255)                                                                                              gTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATc                                                         <  2:245648/148‑1 (MQ=255)                                                                                              gTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATc                                                         >  1:245648/1‑148 (MQ=255)                                                                                              gTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCca                                                       <  1:665586/150‑1 (MQ=255)                                                                                                     cAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaaa                                                                                                                                             >  1:779970/1‑57 (MQ=255)                                                                                                     cAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGaaa                                                                                                                                             <  2:779970/57‑1 (MQ=255)                                                                                                     cAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGcc                                                >  2:70104/1‑150 (MQ=255)                                                                                                     cAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCAGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGcc                                                >  1:1358139/1‑150 (MQ=255)                                                                                                        gCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGCCacg                                             <  2:204332/150‑3 (MQ=255)                                                                                                            aaTCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCTACGCCCCGAAAGGAGATCCACACTGCCAGGCCaa                                         <  2:655626/150‑1 (MQ=255)                                                                                                              tCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCggcgttcgatttcgcctggttcaacccgttcggtgtcgagtcgttctcggcctttgccgctggcctgtc                                                                               <  1:1261172‑M2/110‑70 (MQ=255)                                                                                                              tCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCggcgttcgatttcgcctggttcaacccgttcggtgtcgagtcgttctcggcctttgccgctggcctgtc                                                                               >  2:1261172‑M2/1‑41 (MQ=255)                                                                                                                   cGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGCCAGGCCAATGAacac                                  <  1:483262/150‑1 (MQ=255)                                                                                                                     ccAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCggcgttcgatttcgcctggttcaacccgttcggtgtcgagtcgttctcggcctttgccgctggcctgtcattgtcgatcttcatcttctggggctgggacacttgtctgaccgtca                                <  2:188659‑M2/150‑117 (MQ=255)                                                                                                                      cAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATcc                                                        >  1:622007/1‑125 (MQ=255)                                                                                                                      cAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATcc                                                        <  2:622007/125‑1 (MQ=255)                                                                                                                      cAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACACCAGATCCACACTGCCAGGCCACTGAACACGCa                               >  2:119079/1‑150 (MQ=255)                                                                                                                              gcggcgCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGCCAGGCCAATGAACACGCAACAGGTaa                       <  2:609323/150‑1 (MQ=255)                                                                                                                                 gggggttAGGGCCGCCGAAGGCGGGGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGCCAGGCCAATGAACACGCAACAGGTAACGa                    <  2:1264424/144‑1 (MQ=255)                                                                                                                                     ggTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGCCAGGCCAATGAACACGCAACAGGTAACGATGtt                <  1:430846/150‑1 (MQ=255)                                                                                                                                     ggTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGCCAGGCCAATGAACACGCAACAGGTAACGATGtc                <  2:1358139/150‑2 (MQ=255)                                                                                                                                        aGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGCCAGGCCAATGAACACGCAACAGGTAACGATGTTGAt             <  1:70104/150‑1 (MQ=255)                                                                                                                                                   aaGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGCCAGGCCAATGAACACGCAACAGGTAACGATGTTGATCAACAGGTTGt  >  2:251808/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   ACTGACGGTCAGACAAGTGTCCCAGCCCCAGAAGATGAAGATCGACAATGACAGGCCAGCGGCAAAGGCCGAGAACGACTCGACACCGAACGGGTTGAACCAGGCGAAATCGAACGCCAGCGGTGGCGGCGCGGTAGTGCCGCCGAAAGCGGCGAAAGCAAAGCCGATCAACACCAACAGCTGCAGGGCCACCAAGCCGTACTGCACGGTCATTGTGGTGGCGATACCCCGACAGCAGATCCACACTGCCAGGCCAATGAACACGCAACAGGTAACGATGTTGATCAACAGGTTGT  >  NC_002947/6044527‑6044822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.