New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	445062 =	39 (0.740)	6 (0.150)	6/192	NT	16.8%	intergenic (+32/‑256)	PP_0367/PP_0368	hypothetical protein/acyl‑CoA dehydrogenase
	?	NC_002947	445155 =	29 (0.710)					intergenic (+125/‑163)	PP_0367/PP_0368	hypothetical protein/acyl‑CoA dehydrogenase

GGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTC  >  NC_002947/445008‑445299                                                                                                                                                    |                                                                                                                                                 ggATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATAAGACAACAAATTTTTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCGCCTACAAGGGtt                                                                                                                                                >  1:1004809/1‑150 (MQ=255)    tcatcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgt                                                                                                                                             <  1:631468/150‑1 (MQ=255)          acccccaCGCCTGAATCCTTGCGTCATCCCCTCTTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACACTTTTGTCTTGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGtggcatg                                                                                                                                       <  2:555654/144‑1 (MQ=38)          acacCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTTCCCGCGGATGCGTCCGATCAGACTACACTTTGGTCTGGTCGGGCCTCTTCGCGGGGAAGCACGCTCCTACAAGGGTTTGtggcatg                                                                                                                                       >  2:147330/1‑150 (MQ=255)              cTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTggcatggcat                                                                                                                                   >  1:639574/1‑150 (MQ=255)                    cTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGa                                                                                                                             <  2:85314/150‑1 (MQ=255)                    cTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGATTGACTGCAAACGCGTCCGATCAGACAACACTTTTGTCTGGTCGGGACTCTTCGCGGGCAAGCCCGCTCCTACAAGCGTGTGAGGCATGGCATAACTgt                                                                                                                             >  2:277060/1‑149 (MQ=37)                       aaTACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgt                                                                                                                                             >  2:886544/1‑131 (MQ=255)                       aaTACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgt                                                                                                                                             <  1:886544/131‑1 (MQ=255)                               cGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCAtttt                                                                                                                  <  1:198627/150‑1 (MQ=255)                                   aTCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTTCCCGCGAATGCCTCCGATCAGACAAAAATTTTGTCTGGTCGGGCCTCTTTGCGGGCAAGCCCCCTCCTACAAGGGTTTGTTGGATGGCGTGACTGATTTGTCATTTTTCGt                                                                                                              >  2:1306069/1‑150 (MQ=38)                                   aTCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGt                                                                                                              <  1:916909/150‑1 (MQ=255)                                    tCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGGTTGTGGCATGGCATGACTGATTTTCCATTTTTcttt                                                                                                             >  2:783025/1‑147 (MQ=255)                                      cccTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTTGc                                                                                                           >  2:682380/1‑150 (MQ=255)                                      cccTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGc                                                                                                           >  1:695452/1‑150 (MQ=255)                                      cccTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGc                                                                                                           >  2:32010/1‑150 (MQ=255)                                                    ctgcctTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGGCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCAt                                                                                             >  1:743236/1‑150 (MQ=255)                                                         TTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTcc                                                                                        <  2:722517‑M1/150‑1 (MQ=255)                                                            TAGGGGCGGGCTTGCCCGCGAATGCGCCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTCCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATc                                                                                     >  2:1358734‑M1/1‑150 (MQ=255)                                                               GAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCtt                                                                                  >  1:722517‑M1/1‑150 (MQ=255)                                                                       ttgcccgcgaagaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCAttt                                                                                                                   >  1:1425505‑M2/78‑109 (MQ=255)                                                                       ttgcccgcgaagaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCAttt                                                                                                                   <  2:1425505‑M2/32‑1 (MQ=255)                                                                          cccgcgaagaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCa                                                                                                 >  2:61328‑M2/75‑124 (MQ=255)                                                                          cccgcgaagaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCa                                                                                                 <  1:61328‑M2/50‑1 (MQ=255)                                                                           ccgcgaagaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTg                                                                      >  1:967503‑M2/74‑150 (MQ=255)                                                                           CCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgtg                                                                                                                                            <  1:964587‑M1/80‑1 (MQ=255)                                                                           CCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgtg                                                                                                                                            >  2:964587‑M1/1‑80 (MQ=255)                                                                           CCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTg                                                                      <  1:1111365‑M1/150‑1 (MQ=255)                                                                            CGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATACTTGACAGAAAGCTGa                                                                     <  1:597141‑M1/150‑1 (MQ=255)                                                                            CGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCGCTCAGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAACTGGCACCATAGTCCATCCTTGACAGAAAGCTGa                                                                     >  2:1004809‑M1/1‑150 (MQ=255)                                                                              CGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGc                                                                   >  2:743236‑M1/1‑150 (MQ=255)                                                                                aagaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTa                                                                 >  2:678734‑M2/69‑150 (MQ=255)                                                                                  tGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCCTGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAg                                                                    <  1:100918/145‑1 (MQ=255)                                                                                  tGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAg                                                                    >  2:100918/1‑145 (MQ=255)                                                                                         gATCCGACAACACTTTTGTCGGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGt                                                        <  2:81669/150‑1 (MQ=255)                                                                                          aTCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGtt                                                       >  2:780943/1‑150 (MQ=255)                                                                                             aGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAAAGTAAGTTTCa                                                    >  2:721579/1‑150 (MQ=255)                                                                                                 aacaaTTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAaaca                                                >  1:952583/1‑150 (MQ=255)                                                                                                  acaaTTTTGTCTGGTCGGGTCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAaacaa                                               <  1:783025/150‑1 (MQ=255)                                                                                                  acaaTTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAaacaa                                               <  1:780943/150‑1 (MQ=255)                                                                                                        ttGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGttt                                         <  1:32010/150‑1 (MQ=255)                                                                                                             tGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCg                                    <  2:695452/150‑1 (MQ=255)                                                                                                                   ggCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCAtttt                                                                                                                  >  2:79364/1‑66 (MQ=255)                                                                                                                   ggCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCAtttt                                                                                                                  <  1:79364/66‑1 (MQ=255)                                                                                                                   ggCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATAGGCTTcc                              >  1:1149605/1‑150 (MQ=255)                                                                                                                    gCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgt                                                                                                                                             >  2:55318/1‑38 (MQ=255)                                                                                                                    gCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgt                                                                                                                                             <  1:55318/38‑1 (MQ=255)                                                                                                                    gCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGCAAGTTTCAAACAACTGTTTGATCGGCTTCCg                             >  1:1130059/1‑150 (MQ=255)                                                                                                                    acgcattcgcgggcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCg                             >  2:209915‑M2/33‑150 (MQ=255)                                                                                                                       tctTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCa                          >  2:1145476/1‑150 (MQ=255)                                                                                                                        ctTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGCAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCaa                         <  2:1130059/150‑1 (MQ=255)                                                                                                                             cgGGCACGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGTCTTCAGCGCTCCATAGTCCCTCCTTGACAGCAAGGTAAACTAAACGTAAGGTTCAAACAACTGTTTGATCGGCTTCCGTCAAGcgcg                    <  1:678734/150‑1 (MQ=255)                                                                                                                                gcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGAt                                      >  2:725499‑M2/21‑129 (MQ=255)                                                                                                                                gcaagcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGAt                                      <  1:725499‑M2/109‑1 (MQ=255)                                                                                                                                  aagcccgctcctacaaggGGTTGTGGCATGGCATGACTGATTTGCCATTGTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGGTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCCTCCGCCAAGCGCGGGTCa               >  1:936130‑M2/19‑150 (MQ=255)                                                                                                                                    gcccgctcctacaaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTAAcc             >  1:740756‑M2/17‑150 (MQ=255)                                                                                                                                             tacaaggTTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCcaca        >  2:722016‑M2/8‑146 (MQ=255)                                                                                                                                             tacaaggTTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCcaca        <  1:722016‑M2/139‑1 (MQ=255)                                                                                                                                               caaggGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTc  >  2:1076654‑M2/6‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                 GGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCTTCCGCCAAGCGCGGGTCACCCCACAGAACTC  >  NC_002947/445008‑445299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.